RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 MCF2L2Q86YR7 1114 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 ADHFE1Q8IWW8 467 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 CCDC155Q8N6L0 562 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 RTEL1Q9NZ71 1219 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 VPS54Q9P1Q0 977 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 TELO2Q9Y4R8 837 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 SCN10AQ9Y5Y9 1956 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 TRIP12Q14669 1992 aaPredicted RBP15.93■□□□□ 0.14
CLN3-235ENST00000568497 JAK2O60674 1132 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 CD2BP2O95400 341 aaKnown RBP15.93■□□□□ 0.14
CLN3-235ENST00000568497 CTDNEP1O95476 244 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 PTPN11Q06124 597 aaPredicted RBP15.93■□□□□ 0.14
CLN3-235ENST00000568497 TIGD5Q53EQ6 642 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 BRDTQ58F21 947 aaPredicted RBP15.93■□□□□ 0.14
CLN3-235ENST00000568497 NFRKBQ6P4R8 1299 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 OR6J1Q8NGC5 347 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 MORC4Q8TE76 937 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 MRPL38Q96DV4 380 aaKnown RBP15.93■□□□□ 0.14
CLN3-235ENST00000568497 C17orf80Q9BSJ5 609 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 FAM86C1Q9NVL1 165 aa15.93■□□□□ 0.14
CLN3-235ENST00000568497 USP34Q70CQ2 3546 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 NR3C2P08235 984 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 EDNRBP24530 442 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 SMARCA1P28370 1054 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 EVCP57679 992 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 LY6KQ17RY6 165 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 IER5LQ5T953 404 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 JAKMIP3Q5VZ66 844 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 CNKSR3Q6P9H4 555 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 SUGP1Q8IWZ8 645 aaKnown RBP15.92■□□□□ 0.14
CLN3-235ENST00000568497 FBXL16Q8N461 479 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 RGS22Q8NE09 1264 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 SMARCC2Q8TAQ2 1214 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 PRRX2Q99811 253 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 PDCD2LQ9BRP1 358 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 WDR11Q9BZH6 1224 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 SLKQ9H2G2 1235 aaPredicted RBP15.92■□□□□ 0.14
CLN3-235ENST00000568497 PSTPIP2Q9H939 334 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 CLDND1Q9NY35 253 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 PKD2L1Q9P0L9 805 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 ADD3Q9UEY8 706 aaKnown RBP15.92■□□□□ 0.14
CLN3-235ENST00000568497 CFAP54Q96N23 3096 aa15.92■□□□□ 0.14
CLN3-235ENST00000568497 NID2Q14112 1375 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 SMCO2A6NFE2 343 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 C19orf67A6NJJ6 358 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 RGS20O76081 388 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 SCG2P13521 617 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 PGM5Q15124 567 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 PTGISQ16647 500 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 PFKFB3Q16875 520 aaPredicted RBP15.91■□□□□ 0.14
CLN3-235ENST00000568497 BANK1Q8NDB2 785 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 NSUN6Q8TEA1 469 aaKnown RBP15.91■□□□□ 0.14
CLN3-235ENST00000568497 AFAP1L1Q8TED9 768 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 PBXIP1Q96AQ6 731 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 PABPC5Q96DU9 382 aaKnown RBP15.91■□□□□ 0.14
CLN3-235ENST00000568497 IL17RAQ96F46 866 aa15.91■□□□□ 0.14
CLN3-235ENST00000568497 ZNF274Q96GC6 653 aaPredicted RBP15.91■□□□□ 0.14
CLN3-235ENST00000568497 POP1Q99575 1024 aaKnown RBP15.91■□□□□ 0.14
CLN3-235ENST00000568497 RBM47A0AV96 593 aaKnown RBP15.9■□□□□ 0.14
CLN3-235ENST00000568497 PRPF3O43395 683 aaKnown RBP15.9■□□□□ 0.14
CLN3-235ENST00000568497 PFKFB2O60825 505 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 MRPS9P82933 396 aaKnown RBP15.9■□□□□ 0.14
CLN3-235ENST00000568497 CLUL1Q15846 466 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 TCEAL5Q5H9L2 206 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 LRRC8DQ7L1W4 858 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 CAGE1Q8TC20 777 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 PNMA2Q9UL42 364 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 KCNJ14Q9UNX9 436 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 DOCK5Q9H7D0 1870 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 TECTAO75443 2155 aa15.9■□□□□ 0.14
CLN3-235ENST00000568497 LOC102724159A0A0B4J2E5 919 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 ABHD14A-ACY1A0A1B0GW23 586 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 CPLX1O14810 134 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 KPNA6O60684 536 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 PARNO95453 639 aaKnown RBP15.89■□□□□ 0.13
CLN3-235ENST00000568497 SELPP16109 830 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 IFNAR1P17181 557 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 SSRP1Q08945 709 aaKnown RBP15.89■□□□□ 0.13
CLN3-235ENST00000568497 PWP2Q15269 919 aaKnown RBP15.89■□□□□ 0.13
CLN3-235ENST00000568497 HERC4Q5GLZ8 1057 aaPredicted RBP15.89■□□□□ 0.13
CLN3-235ENST00000568497 RNF135Q8IUD6 432 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 CCDC83Q8IWF9 413 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 DNERQ8NFT8 737 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 BACH2Q9BYV9 841 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 BARHL2Q9NY43 387 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 PCDHA6Q9UN73 950 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 INSL6Q9Y581 213 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 PCDHA8Q9Y5H6 950 aa15.89■□□□□ 0.13
CLN3-235ENST00000568497 CCDC196A0A1B0GTZ2 297 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 EFCAB14O75071 495 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 TXNP10599 105 aaKnown RBP15.88■□□□□ 0.13
CLN3-235ENST00000568497 RBM25P49756 843 aaKnown RBP15.88■□□□□ 0.13
CLN3-235ENST00000568497 ADCY7P51828 1080 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 RCAN1P53805 252 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 AKAP17AQ02040 695 aaKnown RBP15.88■□□□□ 0.13
CLN3-235ENST00000568497 SP2Q02086 613 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 GHRHRQ02643 423 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 TCF15Q12870 199 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 SEMA3FQ13275 785 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 IKBKEQ14164 716 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms