RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	VSIG10L	Q86VR7	867 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	KLHL23	Q8NBE8	558 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	PNMA1	Q8ND90	353 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	POF1B	Q8WVV4	589 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	USP26	Q9BXU7	913 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	TRPC6	Q9Y210	931 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	MRPL42	Q9Y6G3	142 aa	Known RBP	18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	MYO15A	Q9UKN7	3530 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	PPFIA3	O75145	1194 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	DGKI	O75912	1065 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	GLP2R	O95838	553 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	PDGFB	P01127	241 aa	Predicted RBP	18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	HOXA13	P31271	388 aa	Predicted RBP	18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	HSD17B4	P51659	736 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	PGM5	Q15124	567 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	UTP14C	Q5TAP6	766 aa	Known RBP	18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	IL31RA	Q8NI17	732 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	MICAL1	Q8TDZ2	1067 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	TLE6	Q9H808	572 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	KAT14	Q9H8E8	782 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	JMJD4	Q9H9V9	463 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	PCDHGC5	Q9Y5F6	944 aa		18.82	■□□□□ 0.6
CLK3-223	ENST00000568488	PROB1	E7EW31	1015 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	PER2	O15055	1255 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	CCND2	P30279	289 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	LPIN1	Q14693	890 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	PTPN21	Q16825	1174 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	PAN2	Q504Q3	1202 aa	Known RBP	18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	ASPRV1	Q53RT3	343 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	NAALADL2	Q58DX5	795 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	STOX1	Q6ZVD7	989 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	DGKH	Q86XP1	1220 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	TRIM50	Q86XT4	487 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	ESR2	Q92731	530 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	RIPOR3	Q96MK2	946 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	AMN	Q9BXJ7	453 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	HELLS	Q9NRZ9	838 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	CACNA1H	O95180	2353 aa		18.81	■□□□□ 0.6
CLK3-223	ENST00000568488	PRR23A	A6NEV1	266 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	OPLAH	O14841	1288 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	GALR2	O43603	387 aa	Predicted RBP	18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	ID4	P47928	161 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	CYFIP1	Q7L576	1253 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	ERMP1	Q7Z2K6	904 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	LMBR1	Q8WVP7	490 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	EHMT1	Q9H9B1	1298 aa		18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	ZNF215	Q9UL58	517 aa	Predicted RBP	18.8	■□□□□ 0.6
CLK3-223	ENST00000568488	TRIM6-TRIM34	B2RNG4	842 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	PARP1	P09874	1014 aa	Known RBP	18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	SP100	P23497	879 aa	Predicted RBP	18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	NUBP1	P53384	320 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	RBM10	P98175	930 aa	Known RBP	18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	SP4	Q02446	784 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	RUFY4	Q6ZNE9	571 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	FCHSD1	Q86WN1	690 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	CMTR2	Q8IYT2	770 aa	Known RBP	18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	FAM227B	Q96M60	508 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	RNF41	Q9H4P4	317 aa	Predicted RBP	18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	PLXNA3	P51805	1871 aa		18.79	■□□□□ 0.6
CLK3-223	ENST00000568488	PC	P11498	1178 aa	Known RBP	18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	ATF7	P17544	494 aa	Predicted RBP	18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	MX1	P20591	662 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	IBSP	P21815	317 aa	Predicted RBP	18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	ADAM17	P78536	824 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	NEDD9	Q14511	834 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	MCMDC2	Q4G0Z9	681 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	C20orf194	Q5TEA3	1177 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	RSPH3	Q86UC2	560 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	IQCA1	Q86XH1	822 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	TBC1D10C	Q8IV04	446 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	GPR20	Q99678	358 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	MAP3K20	Q9NYL2	800 aa	Known RBP	18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	PCDHA1	Q9Y5I3	950 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	DMD	P11532	3685 aa		18.78	■□□□□ 0.6
CLK3-223	ENST00000568488	CACNA1A	O00555	2505 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	NEDD4	P46934	1319 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	MGAT3	Q09327	533 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	METTL7B	Q6UX53	244 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	SUSD6	Q92537	303 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	NEK1	Q96PY6	1258 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	APOL5	Q9BWW9	433 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	RTEL1	Q9NZ71	1219 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	TELO2	Q9Y4R8	837 aa		18.77	■□□□□ 0.6
CLK3-223	ENST00000568488	NRCAM	Q92823	1304 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488		A0A0D9SFI3	127 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	GCOM1	H8Y6P7	765 aa	Predicted RBP	18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	POLR2M	P0CAP2	368 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	CD52	P31358	61 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	NBL1	P41271	181 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	GHRHR	Q02643	423 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	GNPTAB	Q3T906	1256 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	CCDC178	Q5BJE1	867 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	FBXO47	Q5MNV8	452 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	SPOUT1	Q5T280	376 aa	Known RBP	18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	TAF2	Q6P1X5	1199 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	DNAJB3	Q8WWF6	145 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	LINC01599	Q8WXQ3	324 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	EVI5L	Q96CN4	794 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	CDY2A	Q9Y6F7	541 aa		18.76	■□□□□ 0.59
CLK3-223	ENST00000568488	MYH6	P13533	1939 aa		18.76	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms