RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 EPHA7Q15375 998 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 GJC2Q5T442 439 aaPredicted RBP23.21■■□□□ 1.31
CLN3-212ENST00000564574 ADALQ6DHV7 355 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 NCAPH2Q6IBW4 605 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 PPTC7Q8NI37 304 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 ERMNQ8TAM6 284 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 SEPT1Q8WYJ6 367 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 CSRNP2Q9H175 543 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 UPF3AQ9H1J1 476 aaKnown RBP23.21■■□□□ 1.31
CLN3-212ENST00000564574 BCAS3Q9H6U6 928 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 SPC25Q9HBM1 224 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 MYH9P35579 1960 aaKnown RBP23.2■■□□□ 1.3
CLN3-212ENST00000564574 POTEMA6NI47 508 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 GOLGA6L22H0YM25 854 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 NOP56O00567 594 aaKnown RBP23.2■■□□□ 1.3
CLN3-212ENST00000564574 DYNC1LI2O43237 492 aaPredicted RBP23.2■■□□□ 1.3
CLN3-212ENST00000564574 SLC26A4O43511 780 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 CHMP2AO43633 222 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 ATG7O95352 703 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 GJA9P57773 515 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 NKX3-2P78367 333 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 GRIN1Q05586 938 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 BRDTQ58F21 947 aaPredicted RBP23.2■■□□□ 1.3
CLN3-212ENST00000564574 AXDND1Q5T1B0 1012 aaPredicted RBP23.2■■□□□ 1.3
CLN3-212ENST00000564574 MIS18BP1Q6P0N0 1132 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 NEK9Q8TD19 979 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 CLIC6Q96NY7 704 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 GPR20Q99678 358 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 DISC1Q9NRI5 854 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 PCDHA10Q9Y5I2 948 aa23.2■■□□□ 1.3
CLN3-212ENST00000564574 SORBS3O60504 671 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 PSAPP07602 524 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 CPT1AP50416 773 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 HSDL1Q3SXM5 330 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 HAUS3Q68CZ6 603 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 ABHD15Q6UXT9 468 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 ZNF333Q96JL9 665 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 UNC93B1Q9H1C4 597 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 PAK6Q9NQU5 681 aaPredicted RBP23.19■■□□□ 1.3
CLN3-212ENST00000564574 SAMM50Q9Y512 469 aa23.19■■□□□ 1.3
CLN3-212ENST00000564574 A0A1W2PQ27 194 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 A0A1W2PQ64 194 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 A0A1W2PQD8 194 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 GSTTP1A0A1W2PQM5 241 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 A6NJR5 290 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 EML1O00423 815 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 SUPT20HL2P0C7V6 817 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 CCL5P13501 91 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 SP4Q02446 784 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 KRT79Q5XKE5 535 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 AFG1LQ8WV93 481 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 LENG1Q96BZ8 264 aaPredicted RBP23.18■■□□□ 1.3
CLN3-212ENST00000564574 XPNPEP3Q9NQH7 507 aa23.18■■□□□ 1.3
CLN3-212ENST00000564574 SYNRGQ9UMZ2 1314 aa23.17■■□□□ 1.3
CLN3-212ENST00000564574 GOLGA6L4A6NEF3 574 aa23.17■■□□□ 1.3
CLN3-212ENST00000564574 PPFIA4O75335 1185 aa23.17■■□□□ 1.3
CLN3-212ENST00000564574 MMP3P08254 477 aa23.17■■□□□ 1.3
CLN3-212ENST00000564574 HOXD8P13378 290 aaPredicted RBP23.17■■□□□ 1.3
CLN3-212ENST00000564574 TXLNAP40222 546 aa23.17■■□□□ 1.3
CLN3-212ENST00000564574 POLR3CQ9BUI4 534 aaPredicted RBP23.17■■□□□ 1.3
CLN3-212ENST00000564574 CCSER1Q9C0I3 900 aa23.17■■□□□ 1.3
CLN3-212ENST00000564574 LOXHD1Q8IVV2 1947 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 EMSYQ7Z589 1322 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 IGKV6D-21A0A0A0MT36 114 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 POTEFA5A3E0 1075 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 DKC1O60832 514 aaKnown RBP eCLIP23.16■■□□□ 1.3
CLN3-212ENST00000564574 ADAMTS4O75173 837 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 MUTP22033 750 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 PTGS1P23219 599 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 CST5P28325 142 aaPredicted RBP23.16■■□□□ 1.3
CLN3-212ENST00000564574 TCF7P36402 384 aaPredicted RBP23.16■■□□□ 1.3
CLN3-212ENST00000564574 UBA7P41226 1012 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 MTFR1Q15390 333 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 DGKDQ16760 1214 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 LHX8Q68G74 356 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 SNX29Q8TEQ0 813 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 EIF2AK1Q9BQI3 630 aaKnown RBP23.16■■□□□ 1.3
CLN3-212ENST00000564574 RNF208Q9H0X6 261 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 TUFT1Q9NNX1 390 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 FAM13BQ9NYF5 915 aa23.16■■□□□ 1.3
CLN3-212ENST00000564574 KDM3AQ9Y4C1 1321 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 ZEB2O60315 1214 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 KPNA6O60684 536 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 LGR5O75473 907 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 P4HBP07237 508 aaKnown RBP23.15■■□□□ 1.3
CLN3-212ENST00000564574 C6orf222P0C671 652 aaPredicted RBP23.15■■□□□ 1.3
CLN3-212ENST00000564574 CMA1P23946 247 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 FSCN1Q16658 493 aaKnown RBP23.15■■□□□ 1.3
CLN3-212ENST00000564574 FAM160B1Q5W0V3 765 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 RESP18Q5W5W9 173 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 SHC4Q6S5L8 630 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 CABP7Q86V35 215 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 KCTD17Q8N5Z5 321 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 AFAP1L1Q8TED9 768 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 SYMPKQ92797 1274 aaKnown RBP23.15■■□□□ 1.3
CLN3-212ENST00000564574 HSD17B14Q9BPX1 270 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 TELO2Q9Y4R8 837 aa23.15■■□□□ 1.3
CLN3-212ENST00000564574 PP2D1A8MPX8 630 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 CTAGE5O15320 804 aa23.14■■□□□ 1.29
CLN3-212ENST00000564574 RPA1P27694 616 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms