RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PNMA1Q8ND90 353 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 OTUD7AQ8TE49 926 aaPredicted RBP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 ESR2Q92731 530 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 GPKOWQ92917 476 aaPredicted RBP eCLIP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 CLP1Q92989 425 aaKnown RBP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 PHF7Q9BWX1 381 aaPredicted RBP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 KAT14Q9H8E8 782 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 TLR9Q9NR96 1032 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 HELLSQ9NRZ9 838 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 CLEC1BQ9P126 229 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 USP15Q9Y4E8 981 aaPredicted RBP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 KIAA1671Q9BY89 1806 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 TPRP12270 2363 aaKnown RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 PLXNA3P51805 1871 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 TRIM6-TRIM34B2RNG4 842 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 ENPP3O14638 875 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 ITGB1P05556 798 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 PARP1P09874 1014 aaKnown RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 PCP11498 1178 aaKnown RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 MX1P20591 662 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 CCND2P30279 289 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 HOXA13P31271 388 aaPredicted RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 HOXC8P31273 242 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 HSD17B4P51659 736 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 COASYQ13057 564 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 CAMK1Q14012 370 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 CBX2Q14781 532 aaPredicted RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 PGM5Q15124 567 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 ASPRV1Q53RT3 343 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 CCDC178Q5BJE1 867 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 FAM26DQ5JW98 314 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 UTP14CQ5TAP6 766 aaKnown RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 FCHSD1Q86WN1 690 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 IQCA1Q86XH1 822 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 DGKHQ86XP1 1220 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 IL31RAQ8NI17 732 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 SPPL3Q8TCT6 385 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 MICAL1Q8TDZ2 1067 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 P2RX5Q93086 422 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 AMNQ9BXJ7 453 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 USP26Q9BXU7 913 aa8.51□□□□□ -1.05
VPS4A-203ENST00000564399 RNF41Q9H4P4 317 aaPredicted RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 ZNF215Q9UL58 517 aaPredicted RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 BARX2Q9UMQ3 279 aaPredicted RBP8.51□□□□□ -1.05
VPS4A-203ENST00000564399 PPFIA3O75145 1194 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 DGKIO75912 1065 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 CHRNA1P02708 482 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 DNAJB1P25685 340 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 SP4Q02446 784 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 NEDD9Q14511 834 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 LPIN1Q14693 890 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 MCMDC2Q4G0Z9 681 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 PAN2Q504Q3 1202 aaKnown RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 NAALADL2Q58DX5 795 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 C20orf194Q5TEA3 1177 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 STOX1Q6ZVD7 989 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 CYFIP1Q7L576 1253 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 RSPH3Q86UC2 560 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 TRIM50Q86XT4 487 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 TBC1D10CQ8IV04 446 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 KLHL23Q8NBE8 558 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 LMBR1Q8WVP7 490 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 POF1BQ8WVV4 589 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 EVI5LQ96CN4 794 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 ZNF689Q96CS4 500 aaPredicted RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 ASIC4Q96FT7 647 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 FAM227BQ96M60 508 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 BCAS3Q9H6U6 928 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 TLE6Q9H808 572 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 JMJD4Q9H9V9 463 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 RC3H2Q9HBD1 1191 aaKnown RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 MAP3K20Q9NYL2 800 aaKnown RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 ZBTB47Q9UFB7 747 aaPredicted RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 SUPT16HQ9Y5B9 1047 aaKnown RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 PCDHA1Q9Y5I3 950 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 MRPL42Q9Y6G3 142 aaKnown RBP8.5□□□□□ -1.05
VPS4A-203ENST00000564399 USP34Q70CQ2 3546 aa8.5□□□□□ -1.05
VPS4A-203ENST00000564399 PLXNA4Q9HCM2 1894 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 A0A0D9SFI3 127 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 GCOM1H8Y6P7 765 aaPredicted RBP8.49□□□□□ -1.05
VPS4A-203ENST00000564399 OPLAHO14841 1288 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 PER2O15055 1255 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 GLP2RO95838 553 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 PDGFBP01127 241 aaPredicted RBP8.49□□□□□ -1.05
VPS4A-203ENST00000564399 POLR2MP0CAP2 368 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 ATF7P17544 494 aaPredicted RBP8.49□□□□□ -1.05
VPS4A-203ENST00000564399 IBSPP21815 317 aaPredicted RBP8.49□□□□□ -1.05
VPS4A-203ENST00000564399 ICAM3P32942 547 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 PTPN21Q16825 1174 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 GNPTABQ3T906 1256 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 TAF2Q6P1X5 1199 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 METTL7BQ6UX53 244 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 ASCL5Q7RTU5 278 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 CMTR2Q8IYT2 770 aaKnown RBP8.49□□□□□ -1.05
VPS4A-203ENST00000564399 GPR20Q99678 358 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 EHMT1Q9H9B1 1298 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 TRPC6Q9Y210 931 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 PCDHGC5Q9Y5F6 944 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 NEDD4P46934 1319 aa8.49□□□□□ -1.05
VPS4A-203ENST00000564399 NRCAMQ92823 1304 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms