RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 LRWD1Q9UFC0 647 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 A0A1W2PQ27 194 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 A0A1W2PQ64 194 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 A0A1W2PQD8 194 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 CNGA1P29973 690 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 HSDL1Q3SXM5 330 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 MIER3Q7Z3K6 550 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 TLK2Q86UE8 772 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 OR6J1Q8NGC5 347 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 GOLPH3LQ9H4A5 285 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 TCEAL9Q9UHQ7 104 aa18.66■□□□□ 0.58
VPS4A-202ENST00000562754 GSTTP1A0A1W2PQM5 241 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 WDR64B1ANS9 1081 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 GOLGA6L22H0YM25 854 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 JAK3P52333 1124 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 IRX5P78411 483 aaPredicted RBP18.65■□□□□ 0.58
VPS4A-202ENST00000562754 LAMC2Q13753 1193 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 EPHA7Q15375 998 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 SLC9C1Q4G0N8 1177 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 FSIP1Q8NA03 581 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 RDM1Q8NG50 284 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 AFG1LQ8WV93 481 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 SPATA33Q96N06 139 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 GPR20Q99678 358 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 PRDM10Q9NQV6 1147 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 DISC1Q9NRI5 854 aa18.65■□□□□ 0.58
VPS4A-202ENST00000562754 DYNC1LI2O43237 492 aaPredicted RBP18.64■□□□□ 0.57
VPS4A-202ENST00000562754 DUSP11O75319 330 aaKnown RBP18.64■□□□□ 0.57
VPS4A-202ENST00000562754 ATG7O95352 703 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 SUPT20HL2P0C7V6 817 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 CMA1P23946 247 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 SFNP31947 248 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 ABHD15Q6UXT9 468 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 SMAP1Q8IYB5 467 aaPredicted RBP18.64■□□□□ 0.57
VPS4A-202ENST00000562754 PPTC7Q8NI37 304 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 SNX29Q8TEQ0 813 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 EIF2AK1Q9BQI3 630 aaKnown RBP18.64■□□□□ 0.57
VPS4A-202ENST00000562754 CCSER1Q9C0I3 900 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 Q9Y3F1 56 aa18.64■□□□□ 0.57
VPS4A-202ENST00000562754 A0A087X0B3 334 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 FAM237AA0A1B0GTK4 181 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 GOLGA6L4A6NEF3 574 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 CTAGE5O15320 804 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 MED24O75448 989 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 SPATA31C1P0DKV0 1188 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 PFKFB1P16118 471 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 UBE2HP62256 183 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 CYP4A11Q02928 519 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 PKN2Q16513 984 aaKnown RBP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 ECM1Q16610 540 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 UGCGQ16739 394 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 CABP7Q86V35 215 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 CCDC60Q8IWA6 550 aaPredicted RBP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 ERMNQ8TAM6 284 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 MRPS27Q92552 414 aaKnown RBP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 DYDC2Q96IM9 177 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 PNMA5Q96PV4 448 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 PCYT2Q99447 389 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 UNC93B1Q9H1C4 597 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 UPF3AQ9H1J1 476 aaKnown RBP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 HMX1Q9NP08 348 aaPredicted RBP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 RGL1Q9NZL6 768 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 DDX20Q9UHI6 824 aaKnown RBP18.63■□□□□ 0.57
VPS4A-202ENST00000562754 PCDHA10Q9Y5I2 948 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 SYNRGQ9UMZ2 1314 aa18.63■□□□□ 0.57
VPS4A-202ENST00000562754 MYH9P35579 1960 aaKnown RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 IGKV6D-21A0A0A0MT36 114 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 A0A1B0GVL5 298 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 POTEB3A0JP26 581 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 MYADML2A6NDP7 307 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 DDX11L8A8MPP1 907 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 NOP56O00567 594 aaKnown RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 MMP3P08254 477 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 RARBP10826 455 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 HOXD8P13378 290 aaPredicted RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 TCF7P36402 384 aaPredicted RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 CCT6AP40227 531 aaKnown RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 UBA7P41226 1012 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 GJA9P57773 515 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 GRB10Q13322 594 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 KARSQ15046 597 aaKnown RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 MTFR1Q15390 333 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 KRT79Q5XKE5 535 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 HAUS3Q68CZ6 603 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 MIS18BP1Q6P0N0 1132 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 POTEBQ6S5H4 581 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 BANK1Q8NDB2 785 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 LRRC15Q8TF66 581 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 SEPT1Q8WYJ6 367 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 HSD17B14Q9BPX1 270 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 POLR3CQ9BUI4 534 aaPredicted RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 AP5M1Q9H0R1 490 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 WRAP73Q9P2S5 460 aaPredicted RBP18.62■□□□□ 0.57
VPS4A-202ENST00000562754 HPSEQ9Y251 543 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 SAMM50Q9Y512 469 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 IGSF9BQ9UPX0 1349 aa18.62■□□□□ 0.57
VPS4A-202ENST00000562754 A6NJR5 290 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 ADAMTS4O75173 837 aa18.61■□□□□ 0.57
VPS4A-202ENST00000562754 LGR5O75473 907 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms