RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	DTL	Q9NZJ0	730 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	CGGBP1	Q9UFW8	167 aa	Predicted RBP	3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	TMEFF2	Q9UIK5	374 aa	Predicted RBP	3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	SUGT1	Q9Y2Z0	365 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	SLC4A7	Q9Y6M7	1214 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	ABCA8	O94911	1581 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	ARHGEF5	Q12774	1597 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	MYO5C	Q9NQX4	1742 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	PZP	P20742	1482 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	GRIN2A	Q12879	1464 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	MAGI1	Q96QZ7	1491 aa	Predicted RBP	3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	PREX2	Q70Z35	1606 aa		3.41	□□□□□ -1.86
SPG11-223	ENST00000560858	TDRD9	Q8NDG6	1382 aa	Known RBP	3.4	□□□□□ -1.86
SPG11-223	ENST00000560858	PATL2	C9JE40	543 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	UNC13B	O14795	1591 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	ACO1	P21399	889 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	TUBA3C	Q13748	450 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	ZNF568	Q3ZCX4	644 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	TUBA3E	Q6PEY2	450 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	TEPP	Q6URK8	271 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	SPATA31E1	Q6ZUB1	1445 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858		Q6ZUG5	572 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	CEP68	Q76N32	757 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	RBBP8NL	Q8NC74	664 aa	Predicted RBP	3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	FAM89A	Q96GI7	184 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	SPON2	Q9BUD6	331 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	KLHL25	Q9H0H3	589 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	GPRC5C	Q9NQ84	441 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	ZNF652	Q9Y2D9	606 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	COA3	Q9Y2R0	106 aa	Predicted RBP	3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	TIMM13	Q9Y5L4	95 aa	Predicted RBP	3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	SLC12A7	Q9Y666	1083 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	RNF17	Q9BXT8	1623 aa	Known RBP	3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	RALGAPB	Q86X10	1494 aa		3.4	□□□□□ -1.87
SPG11-223	ENST00000560858	ANKRD30B	Q9BXX2	1392 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	MAST1	Q9Y2H9	1570 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	ABCC5	O15440	1437 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	TRO	Q12816	1431 aa	Predicted RBP	3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	U2SURP	O15042	1029 aa	Known RBP	3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	RAMP2	O60895	175 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	CHGB	P05060	677 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	GTF2A2	P52657	109 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	RPL11	P62913	178 aa	Known RBP	3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	DDX10	Q13206	875 aa	Known RBP	3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	MBLAC2	Q68D91	279 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	LDLRAD3	Q86YD5	345 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	KIAA0825	Q8IV33	1275 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	ARRDC4	Q8NCT1	418 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	NUDT10	Q8NFP7	164 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	COPS5	Q92905	334 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	NUDT11	Q96G61	164 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	TMEM169	Q96HH4	297 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	FGD4	Q96M96	766 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	PRRX2	Q99811	253 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	DMRT1	Q9Y5R6	373 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	TRPM1	Q7Z4N2	1603 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	CDC42BPB	Q9Y5S2	1711 aa		3.39	□□□□□ -1.87
SPG11-223	ENST00000560858	CCDC7	Q96M83	1385 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	PLXNC1	O60486	1568 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	NUP160	Q12769	1436 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	ANP32C	O43423	234 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	MYO1B	O43795	1136 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	KLHL18	O94889	574 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	LRG1	P02750	347 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	EPHX1	P07099	455 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	C1S	P09871	688 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	FPR2	P25090	351 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	RAC3	P60763	192 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	SLC7A5	Q01650	507 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	SCRN1	Q12765	414 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	LRCH2	Q5VUJ6	765 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	POMZP3	Q6PJE2	187 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	RUFY4	Q6ZNE9	571 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	FUK	Q8N0W3	1084 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	NEIL1	Q96FI4	390 aa	Predicted RBP	3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	AJUBA	Q96IF1	538 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	PHAX	Q9H814	394 aa	Known RBP	3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	MMRN2	Q9H8L6	949 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	AKT3	Q9Y243	479 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858		X6R8D5	127 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	SYNJ2	O15056	1496 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	ABCC10	Q5T3U5	1492 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	ZNF608	Q9ULD9	1512 aa	Predicted RBP	3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	WASHC2A	Q641Q2	1341 aa		3.38	□□□□□ -1.87
SPG11-223	ENST00000560858	SHROOM2	Q13796	1616 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	IQGAP3	Q86VI3	1631 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	EIF2AK4	Q9P2K8	1649 aa	Known RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	PTPRG	P23470	1445 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	UHRF1BP1	Q6BDS2	1440 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	KIAA1107	Q9UPP5	1409 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	TCRBV5S2	A0A599	114 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	RAD17	O75943	681 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	FBXO21	O94952	628 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	SMAD2	Q15796	467 aa	Known RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	INF2	Q27J81	1249 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	STEAP3	Q658P3	488 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	TMC5	Q6UXY8	1006 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	POLN	Q7Z5Q5	900 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	FBXO33	Q7Z6M2	555 aa		3.37	□□□□□ -1.87

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