RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 DEFB103AP81534 67 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 TSGA10IPQ3SY00 556 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 PLEKHG4Q58EX7 1191 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 YME1L1Q96TA2 773 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 BCAS3Q9H6U6 928 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 JPH1Q9HDC5 661 aaPredicted RBP14.37□□□□□ -0.11
SNX1-209ENST00000559961 PRDM6Q9NQX0 595 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 MTUS1Q9ULD2 1270 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 UBIAD1Q9Y5Z9 338 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 MTCH2Q9Y6C9 303 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 MYH6P13533 1939 aa14.37□□□□□ -0.11
SNX1-209ENST00000559961 UPP2O95045 317 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 REC8O95072 547 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 METAP2P50579 478 aaKnown RBP eCLIP14.36□□□□□ -0.11
SNX1-209ENST00000559961 RCAN1P53805 252 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 EXOSC10Q01780 885 aaKnown RBP14.36□□□□□ -0.11
SNX1-209ENST00000559961 SEMA3FQ13275 785 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 AP3B2Q13367 1082 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 GPNMBQ14956 572 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 PTPROQ16827 1216 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 BLOC1S2Q6QNY1 142 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 TRIM50Q86XT4 487 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 LMBR1Q8WVP7 490 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 HLA-CQ95604 372 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 SAMD11Q96NU1 681 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 MXRA8Q9BRK3 442 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 SLC9A2Q9UBY0 812 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 TRPC6Q9Y210 931 aa14.36□□□□□ -0.11
SNX1-209ENST00000559961 LAMA2P24043 3122 aaKnown RBP14.36□□□□□ -0.11
SNX1-209ENST00000559961 NEFLP07196 543 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 KCNA2P16389 499 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 ITGB5P18084 799 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 MARK3P27448 753 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 IGBP1P78318 339 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 GRB10Q13322 594 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 GRIK4Q16099 956 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 CEP55Q53EZ4 464 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 IER5Q5VY09 327 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 WWC2Q6AWC2 1192 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 FBXO22Q8NEZ5 403 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 ADAMTS19Q8TE59 1207 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 WNT8BQ93098 351 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 UHRF1Q96T88 793 aaPredicted RBP14.35□□□□□ -0.11
SNX1-209ENST00000559961 IFIH1Q9BYX4 1025 aaKnown RBP14.35□□□□□ -0.11
SNX1-209ENST00000559961 C6orf50Q9HD87 102 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 KCNH7Q9NS40 1196 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 BARHL2Q9NY43 387 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 TUBE1Q9UJT0 475 aa14.35□□□□□ -0.11
SNX1-209ENST00000559961 ATP9AO75110 1047 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 GNA11P29992 359 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 HOXC8P31273 242 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 ERVK-21P61565 698 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 HIC1Q14526 733 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 FAM160B1Q5W0V3 765 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 TRAF7Q6Q0C0 670 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.34□□□□□ -0.112e-8■■■■■ 31.5
SNX1-209ENST00000559961 TMCO2Q7Z6W1 182 aaPredicted RBP14.34□□□□□ -0.11
SNX1-209ENST00000559961 BICD2Q8TD16 824 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 TCEANC2Q96MN5 208 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 JAKMIP1Q96N16 626 aaKnown RBP14.34□□□□□ -0.11
SNX1-209ENST00000559961 ANO3Q9BYT9 981 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 KIAA1217Q5T5P2 1943 aa14.34□□□□□ -0.11
SNX1-209ENST00000559961 GSTTP1A0A1W2PQM5 241 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 LCHNA4D1U4 455 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 LINC01553A4QN01 128 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 BACH1O14867 736 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 SLC26A2P50443 739 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 STAT5BP51692 787 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 MBTPS1Q14703 1052 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 FAM26DQ5JW98 314 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 Q6ZUG5 572 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 TOP1MTQ969P6 601 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 RNF216Q9NWF9 866 aaPredicted RBP14.33□□□□□ -0.12
SNX1-209ENST00000559961 BRPF3Q9ULD4 1205 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 NFASCO94856 1347 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 CNTNAP5Q8WYK1 1306 aa14.33□□□□□ -0.12
SNX1-209ENST00000559961 BAZ2BQ9UIF8 2168 aaKnown RBP14.32□□□□□ -0.12
SNX1-209ENST00000559961 STXBP3O00186 592 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 SCG2P13521 617 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 PLPPR4Q7Z2D5 763 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 RPAINQ86UA6 219 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 RASEFQ8IZ41 740 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 GDPD5Q8WTR4 605 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 DNAJB3Q8WWF6 145 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 BRF1Q92994 677 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 IL17RAQ96F46 866 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 RWDD3Q9Y3V2 267 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 A0A0C4DFX4 3053 aa14.32□□□□□ -0.12
SNX1-209ENST00000559961 POTEB3A0JP26 581 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 EPOPA6NHQ4 379 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 GHRP10912 638 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 INSRRP14616 1297 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 ACTR2P61160 394 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 APOBRQ0VD83 1088 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 PFKFB3Q16875 520 aaPredicted RBP14.31□□□□□ -0.12
SNX1-209ENST00000559961 ADCK5Q3MIX3 580 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 ODR4Q5SWX8 454 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 JAKMIP3Q5VZ66 844 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 MIS18BP1Q6P0N0 1132 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 POTEBQ6S5H4 581 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms