RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 L1CAMP32004 1257 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 GRIA2P42262 883 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 MESP2Q0VG99 397 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 SCRN1Q12765 414 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 SF1Q15637 639 aaKnown RBP8.39□□□□□ -1.07
RTF1-204ENST00000558117 SYDE1Q6ZW31 735 aaPredicted RBP8.39□□□□□ -1.07
RTF1-204ENST00000558117 SPATC1Q76KD6 591 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 ST13P5Q8NFI4 369 aaPredicted RBP8.39□□□□□ -1.07
RTF1-204ENST00000558117 GPRC5CQ9NQ84 441 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 ACSL6Q9UKU0 697 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 ALS2Q96Q42 1657 aa8.39□□□□□ -1.07
RTF1-204ENST00000558117 PXDNLA1KZ92 1463 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 ANKRD30AQ9BXX3 1397 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 TRPM3Q9HCF6 1732 aaPredicted RBP8.38□□□□□ -1.07
RTF1-204ENST00000558117 IGSF1Q8N6C5 1336 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 CAPNS1P04632 268 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 MPOP05164 745 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 C8AP07357 584 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 HSPA8P11142 646 aaKnown RBP8.38□□□□□ -1.07
RTF1-204ENST00000558117 PPP2R2AP63151 447 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 RBM10P98175 930 aaKnown RBP8.38□□□□□ -1.07
RTF1-204ENST00000558117 SOGA3Q5TF21 947 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 OLFML2BQ68BL8 750 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 UBXN4Q92575 508 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 COPS5Q92905 334 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 NKX2-4Q9H2Z4 354 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 CYP26B1Q9NR63 512 aa8.38□□□□□ -1.07
RTF1-204ENST00000558117 E9PCH4 1651 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 NPHP3-ACAD11A0A0J9YXS1 232 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 NFIBO00712 420 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 CORO7P57737 925 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 TMEM62Q0P6H9 643 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 RASGRF1Q13972 1273 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 RASA3Q14644 834 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 TMEM132EQ6IEE7 984 aa8.37□□□□□ -1.07
RTF1-204ENST00000558117 BHLHE22Q8NFJ8 381 aaPredicted RBP8.37□□□□□ -1.07
RTF1-204ENST00000558117 LRRC37A3O60309 1634 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 BRD4O60885 1362 aaPredicted RBP8.36□□□□□ -1.07
RTF1-204ENST00000558117 THBDP07204 575 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 TMEM253P0C7T8 217 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 ERVFRD-1P60508 538 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 CPNE8Q86YQ8 564 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 DEPDC7Q96QD5 511 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 ZNF552Q9H707 407 aaPredicted RBP8.36□□□□□ -1.07
RTF1-204ENST00000558117 KCNK12Q9HB15 430 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 SNTG2Q9NY99 539 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 CLEC1BQ9P126 229 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 PFDN2Q9UHV9 154 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 QSER1Q2KHR3 1735 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 DAPK1P53355 1430 aa8.36□□□□□ -1.07
RTF1-204ENST00000558117 ABLIM1O14639 778 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 PEX10O60683 326 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 SNRPB2P08579 225 aaKnown RBP8.35□□□□□ -1.07
RTF1-204ENST00000558117 SDHBP21912 280 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 HOXC12P31275 282 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 ECI1P42126 302 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 RAB3GAP1Q15042 981 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 ZNF124Q15973 351 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 PRSS53Q2L4Q9 553 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 SRPK1Q96SB4 655 aaKnown RBP8.35□□□□□ -1.07
RTF1-204ENST00000558117 LNPKQ9C0E8 428 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 OSBPL2Q9H1P3 480 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 TNFRSF12AQ9NP84 129 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 PDLIM7Q9NR12 457 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 TFCP2L1Q9NZI6 479 aa8.35□□□□□ -1.07
RTF1-204ENST00000558117 KCPQ6ZWJ8 1503 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 HRKO00198 91 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 ARNTLO00327 626 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 NPHS1O60500 1241 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 DIAPH1O60610 1272 aaKnown RBP8.34□□□□□ -1.07
RTF1-204ENST00000558117 SEMA7AO75326 666 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 TSPAN15O95858 294 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 PLS3P13797 630 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 TACR1P25103 407 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 RAP1GAPP47736 663 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 MVKQ03426 396 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 MTERF2Q49AM1 385 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 BICRALQ6AI39 1079 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 FRS2Q8WU20 508 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 KCNN1Q92952 543 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 MKL1Q969V6 931 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 SGSM3Q96HU1 749 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 SPATA9Q9BWV2 254 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 MCOLN1Q9GZU1 580 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 ARHGEF4Q9NR80 690 aa8.34□□□□□ -1.07
RTF1-204ENST00000558117 RGPD8O14715 1765 aaPredicted RBP8.34□□□□□ -1.07
RTF1-204ENST00000558117 KDM2BQ8NHM5 1336 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 CLTCL1P53675 1640 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 TCAF2A6NFQ2 919 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 NUDT19A8MXV4 375 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 MSL3P1P0C860 447 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 KCNJ6P48051 423 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 GFRA1P56159 465 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 CABP7Q86V35 215 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 KREMEN2Q8NCW0 462 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 NPLOC4Q8TAT6 608 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 SIRT5Q9NXA8 310 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 STK26Q9P289 416 aa8.33□□□□□ -1.08
RTF1-204ENST00000558117 TMEFF2Q9UIK5 374 aaPredicted RBP8.33□□□□□ -1.08
RTF1-204ENST00000558117 CNTNAP1P78357 1384 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms