RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TRIM6-TRIM34B2RNG4 842 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 STXBP3O00186 592 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 NCK2O43639 380 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 CHRNA1P02708 482 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 MMP1P03956 469 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 GHRP10912 638 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 CCND2P30279 289 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 BMPR1AP36894 532 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 ADAM17P78536 824 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 CAMK1Q14012 370 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 FAM26DQ5JW98 314 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 ANKRD45Q5TZF3 282 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 EDAQ92838 391 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 APBB2Q92870 758 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 CLP1Q92989 425 aaKnown RBP9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 IGFLR1Q9H665 355 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 MLXIPQ9HAP2 919 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 RNF216Q9NWF9 866 aaPredicted RBP9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 PPP4R2Q9NY27 417 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 CD207Q9UJ71 328 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 FRMPD4Q14CM0 1322 aa9.49□□□□□ -0.89
CCDC88C-214ENST00000557507 TMEM221A6NGB7 291 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 M0R296 226 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 NOP56O00567 594 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 ZNF213O14771 459 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 RB1P06400 928 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 TGFB3P10600 412 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 DNAJB1P25685 340 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 MRPS9P82933 396 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 ARHGAP4P98171 946 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 MGAT3Q09327 533 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 TCF15Q12870 199 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 LPIN1Q14693 890 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 CCDC178Q5BJE1 867 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 METTL7BQ6UX53 244 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 RUFY4Q6ZNE9 571 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 ADGRD2Q7Z7M1 963 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 FCHSD1Q86WN1 690 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 LINC01599Q8WXQ3 324 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 ZNF689Q96CS4 500 aaPredicted RBP9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 MSLNLQ96KJ4 702 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 GPR20Q99678 358 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 EHMT1Q9H9B1 1298 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 ALG13Q9NP73 1137 aaKnown RBP9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 ZSWIM5Q9P217 1185 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 MAD2L2Q9UI95 211 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 RWDD3Q9Y3V2 267 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 PCDHA1Q9Y5I3 950 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 DENND4AQ7Z401 1863 aa9.48□□□□□ -0.89
CCDC88C-214ENST00000557507 KLRF2D3W0D1 207 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 ZBTB5O15062 677 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 GLP2RO95838 553 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 ICAM3P32942 547 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 NDUFV1P49821 464 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 PTPN5P54829 565 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 SP4Q02446 784 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 CACNB1Q02641 598 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 ADAM15Q13444 863 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 BTG3Q14201 252 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 SEC23AQ15436 765 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 UTP14CQ5TAP6 766 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 TRIM67Q6ZTA4 783 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 CYFIP1Q7L576 1253 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 BMP8AQ7Z5Y6 402 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 TICAM2Q86XR7 235 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 HOMER1Q86YM7 354 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 SMRP1Q8NCR6 262 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 RILPL2Q969X0 211 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 INPP4AQ96PE3 977 aaPredicted RBP9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 USP26Q9BXU7 913 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 MAP3K20Q9NYL2 800 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 CLEC1BQ9P126 229 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 PCDHGC5Q9Y5F6 944 aa9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 MRPL42Q9Y6G3 142 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-214ENST00000557507 C2orf16Q68DN1 1984 aa9.46□□□□□ -0.89
CCDC88C-214ENST00000557507 DMDP11532 3685 aa9.46□□□□□ -0.89
CCDC88C-214ENST00000557507 PALM3A6NDB9 673 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 LOC730098B7Z3J9 87 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 GCOM1H8Y6P7 765 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 CYTH3O43739 400 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 DGKIO75912 1065 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 EYA4O95677 639 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 ITGB1P05556 798 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 POLR2MP0CAP2 368 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 GNAT1P11488 350 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 SDSP20132 328 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 NT5C2P49902 561 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 VCPP55072 806 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 RRP1P56182 461 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 ZXDAP98168 799 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 IFIT1BQ5T764 474 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 SAMD3Q8N6K7 520 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 PBXIP1Q96AQ6 731 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 PIGSQ96S52 555 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 UBAC1Q9BSL1 405 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 FAM86C1Q9NVL1 165 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 ZNF215Q9UL58 517 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 BARX2Q9UMQ3 279 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 PLAGL2Q9UPG8 496 aa9.46□□□□□ -0.9
CCDC88C-214ENST00000557507 CACNA1AO00555 2505 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms