RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 COL9A3Q14050 684 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 RNF20Q5VTR2 975 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 SYNE3Q6ZMZ3 975 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 FANCBQ8NB91 859 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 GDPD5Q8WTR4 605 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 SEPT8Q92599 483 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 NLRC5Q86WI3 1866 aa12.72□□□□□ -0.37
CCDC88C-213ENST00000557455 NRCAMQ92823 1304 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 LINC01553A4QN01 128 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 ATP9AO75110 1047 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 UBE2SQ16763 222 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 TMTC3Q6ZXV5 915 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 HEATR3Q7Z4Q2 680 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 MICU3Q86XE3 530 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 LMBR1Q8WVP7 490 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 HLA-CQ95604 372 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 SUGCTQ9HAC7 445 aa12.71□□□□□ -0.37
CCDC88C-213ENST00000557455 BDP1A6H8Y1 2624 aa12.71□□□□□ -0.38
CCDC88C-213ENST00000557455 KCNA2P16389 499 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 ITGB5P18084 799 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 ADAM17P78536 824 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 HTRA4P83105 476 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 MKRN4PQ13434 485 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 MTMR1Q13613 665 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 SGMS1Q86VZ5 419 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 SEPT1Q8WYJ6 367 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 APBB2Q92870 758 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 NEK1Q96PY6 1258 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 OSBPL7Q9BZF2 842 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 EHMT1Q9H9B1 1298 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 PKD2L1Q9P0L9 805 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 PCDHA6Q9UN73 950 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 PCDHA8Q9Y5H6 950 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 UBIAD1Q9Y5Z9 338 aa12.7□□□□□ -0.38
CCDC88C-213ENST00000557455 LOXHD1Q8IVV2 1947 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 GSTTP1A0A1W2PQM5 241 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 MAFGO15525 162 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 UPP2O95045 317 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 PPFIA1Q13136 1202 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 BMP2KLQ5H9B9 411 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 FAM26DQ5JW98 314 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 TAF2Q6P1X5 1199 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 APOA5Q6Q788 366 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 FBXO22Q8NEZ5 403 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 GLG1Q92896 1179 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 TOP1MTQ969P6 601 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 NECAB3Q96P71 396 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 YME1L1Q96TA2 773 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 C17orf80Q9BSJ5 609 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 IFIH1Q9BYX4 1025 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 RBM28Q9NW13 759 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 ERAP1Q9NZ08 941 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 RALGAPA2Q2PPJ7 1873 aa12.69□□□□□ -0.38
CCDC88C-213ENST00000557455 CNTNAP5Q8WYK1 1306 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 MARK3P27448 753 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 NAPAP54920 295 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 GRIK4Q16099 956 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 WWC2Q6AWC2 1192 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 RSPH3Q86UC2 560 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 SP7Q8TDD2 431 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 SAMD11Q96NU1 681 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 SMARCAD1Q9H4L7 1026 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 JADE2Q9NQC1 790 aa12.68□□□□□ -0.38
CCDC88C-213ENST00000557455 ZBTB43O43298 467 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 CHRNA1P02708 482 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 RTN1Q16799 776 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 RUFY4Q6ZNE9 571 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 CENPQQ7L2Z9 268 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 DHX32Q7L7V1 743 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 RPAINQ86UA6 219 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 SKAP1Q86WV1 359 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 TCEANC2Q96MN5 208 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 MXRA8Q9BRK3 442 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 JPH1Q9HDC5 661 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 RIC8AQ9NPQ8 531 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 KCNH7Q9NS40 1196 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 SLC9A2Q9UBY0 812 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 TUBE1Q9UJT0 475 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 BRPF3Q9ULD4 1205 aa12.67□□□□□ -0.38
CCDC88C-213ENST00000557455 BRWD1Q9NSI6 2320 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 FOSP01100 380 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 GHRP10912 638 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 IGBP1P78318 339 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 EXOSC10Q01780 885 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 KRT32Q14532 448 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 PTPROQ16827 1216 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 EPC2Q52LR7 807 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 PPP1R18Q6NYC8 613 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 TEX2Q8IWB9 1127 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 DNAJB3Q8WWF6 145 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 TNPO1Q92973 898 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 SDF4Q9BRK5 362 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 AZI2Q9H6S1 392 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 V9GY48 417 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 COL4A6Q14031 1691 aa12.66□□□□□ -0.38
CCDC88C-213ENST00000557455 KLF18A0A0U1RQI7 1052 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 MBLAC1A4D2B0 266 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 SMCO2A6NFE2 343 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 RRN3P2A6NIE6 340 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms