RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SH3GLB2	Q9NR46	395 aa		5.42	□□□□□ -1.54
SYNE2-223	ENST00000557005	HOMER3	Q9NSC5	361 aa		5.42	□□□□□ -1.54
SYNE2-223	ENST00000557005	ATG3	Q9NT62	314 aa		5.42	□□□□□ -1.54
SYNE2-223	ENST00000557005	TMOD2	Q9NZR1	351 aa		5.42	□□□□□ -1.54
SYNE2-223	ENST00000557005	ARMCX3	Q9UH62	379 aa	Predicted RBP	5.42	□□□□□ -1.54
SYNE2-223	ENST00000557005	SNX24	Q9Y343	169 aa		5.42	□□□□□ -1.54
SYNE2-223	ENST00000557005	SETD1B	Q9UPS6	1966 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SNAP23	O00161	211 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	CHUK	O15111	745 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	KRT14	P02533	472 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	ATF7	P17544	494 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	LIFR	P42702	1097 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RFX5	P48382	616 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	IRAK1	P51617	712 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	ATP2C1	P98194	919 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RFX8	Q6ZV50	586 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	KLHL29	Q96CT2	875 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	DDX47	Q9H0S4	455 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TXLNG	Q9NUQ3	528 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	NOP53	Q9NZM5	478 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PXDN	Q92626	1479 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PDS5A	Q29RF7	1337 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	MAP3K7	O43318	606 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PLA2G4B	P0C869	781 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	FER	P16591	822 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SSTR3	P32745	418 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	LSP1	P33241	339 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	CYP4A11	Q02928	519 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TBX2	Q13207	712 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	MKRN4P	Q13434	485 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	BIRC2	Q13490	618 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SGO2	Q562F6	1265 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	NLRP10	Q86W26	655 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SLFN12	Q8IYM2	578 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PRPF38A	Q8NAV1	312 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	MDM1	Q8TC05	714 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	MIPOL1	Q8TD10	442 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	NEK9	Q8TD19	979 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	HNRNPLL	Q8WVV9	542 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RUBCN	Q92622	972 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	HAUS1	Q96CS2	278 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SPDL1	Q96EA4	605 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	AK8	Q96MA6	479 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	VCPKMT	Q9H867	229 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	BCS1L	Q9Y276	419 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	AFDN	P55196	1824 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	CCDC195	A0A1B0GUA6	201 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	GSG1L2	A8MUP6	293 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RASGRF2	O14827	1237 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	GNPAT	O15228	680 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	H2AFZ	P0C0S5	128 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TOB1	P50616	345 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	ITIH3	Q06033	890 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PDIA6	Q15084	440 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TXNRD1	Q16881	649 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PARP10	Q53GL7	1025 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	H2AFV	Q71UI9	128 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SRBD1	Q8N5C6	995 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	CCDC110	Q8TBZ0	833 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	ARL8A	Q96BM9	186 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TSC22D3	Q99576	134 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	PCDHA12	Q9UN75	941 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	USP17L5	A8MUK1	530 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	ZRANB2	O95218	330 aa	Known RBP eCLIP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	SRGN	P10124	158 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	MYCL	P12524	364 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	COPB2	P35606	906 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	LRIG3	Q6UXM1	1119 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	STAG2	Q8N3U4	1231 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	KIF2B	Q8N4N8	673 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	TGS1	Q96RS0	853 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	DBR1	Q9UK59	544 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	THRAP3	Q9Y2W1	955 aa	Known RBP	5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RIMBP3C	A6NJZ7	1639 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RIMBP3B	A6NNM3	1639 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	RIMBP3	Q9UFD9	1639 aa		5.41	□□□□□ -1.54
SYNE2-223	ENST00000557005	COL15A1	P39059	1388 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	UTY	O14607	1347 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	SGK1	O00141	431 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	DAPK3	O43293	454 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	ACTN1	P12814	892 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	ELF1	P32519	619 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	CARS	P49589	748 aa	Known RBP	5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	ADCY2	Q08462	1091 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	MYO1E	Q12965	1108 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	TTMP	Q5BVD1	217 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	C6orf118	Q5T5N4	469 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	TTBK2	Q6IQ55	1244 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	KDM7A	Q6ZMT4	941 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	SREK1	Q8WXA9	508 aa	Known RBP	5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	RSAD2	Q8WXG1	361 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	CHMP6	Q96FZ7	201 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	EHD4	Q9H223	541 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005		E9PMD0	336 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	HSPA1L	P34931	641 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	SERPINB6	P35237	376 aa		5.4	□□□□□ -1.54
SYNE2-223	ENST00000557005	PSMC4	P43686	418 aa		5.4	□□□□□ -1.54

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