RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PSMC6P62333 389 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 ARHGAP4P98171 946 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 ZNF543Q08ER8 600 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 ODR4Q5SWX8 454 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 ALKBH5Q6P6C2 394 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 TRAPPC11Q7Z392 1133 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 OR2W6PQ8NHA6 318 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 IPO4Q8TEX9 1081 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 MRRFQ96E11 262 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 PNMA5Q96PV4 448 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 AMNQ9BXJ7 453 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 BLOC1S4Q9NUP1 217 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 FRMD4BQ9Y2L6 1034 aa13.32□□□□□ -0.28
CCDC88C-211ENST00000556726 ARHGEF35A5YM69 484 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 E7EVH7 732 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 ECM2O94769 699 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 MMP10P09238 476 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 COPB2P35606 906 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 TMEM132AQ24JP5 1023 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 GPATCH4Q5T3I0 446 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 ZNF746Q6NUN9 644 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 FAM178BQ8IXR5 827 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 MTMR8Q96EF0 704 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 DNAJC7Q99615 494 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 STIM2Q9P246 746 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 BAZ2AQ9UIF9 1905 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 A0A087X0T9 212 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 F5H6K3 240 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 MYL1P05976 194 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 FAM228BP0C875 321 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 MYBP10242 640 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 LRRC63Q05C16 580 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 KLRC3Q07444 240 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 PAK2Q13177 524 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 ZC2HC1CQ53FD0 456 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 NSMFQ6X4W1 530 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 OTUD6BQ8N6M0 293 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 ELMO3Q96BJ8 720 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 BICD1Q96G01 975 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 MARF1Q9Y4F3 1742 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 KDM4FA0A1W2PPD8 638 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 GOLGA8IPA6NC78 632 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 GOLGA8JA6NMD2 632 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 BUB1BO60566 1050 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 STAT1P42224 750 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 CRKP46108 304 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 KRT71Q3SY84 523 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 TTC31Q49AM3 519 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 OGFOD1Q8N543 542 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 RPGRIP1Q96KN7 1286 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 FAM184BQ9ULE4 1060 aa13.31□□□□□ -0.28
CCDC88C-211ENST00000556726 GPR75-ASB3A0A0A6YYF3 556 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 GOLGA6L7A0A1B0GV03 622 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 GSTTP1A0A1W2PQM5 241 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 CALUO43852 315 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 FLOT1O75955 427 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 H2AFZP0C0S5 128 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 CTNNA1P35221 906 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 ADCY1Q08828 1119 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 PRKG1Q13976 671 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 LRCH2Q5VUJ6 765 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 H2AFVQ71UI9 128 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 MAGEF1Q9HAY2 307 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 RIC8AQ9NPQ8 531 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 PSMD14O00487 310 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 ZBTB39O15060 712 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 APBA3O96018 575 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 PRPHP41219 470 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 CDR1P51861 262 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 NNTQ13423 1086 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 SLC10A5Q5PT55 438 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 CDC42EP5Q6NZY7 148 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 PDXDC1Q6P996 788 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 MMTAG2Q9BU76 263 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 SH2D4AQ9H788 454 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 TUBGCP6Q96RT7 1819 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 KIF1AQ12756 1690 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 LRRC10BA6NIK2 292 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 PPIP5K2O43314 1243 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 ECM1Q16610 540 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 CCNI2Q6ZMN8 369 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 GBP6Q6ZN66 633 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 GPATCH11Q8N954 259 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 DNAJC17Q9NVM6 304 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 HPCAL4Q9UM19 191 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 PTPN22Q9Y2R2 807 aa13.3□□□□□ -0.28
CCDC88C-211ENST00000556726 KDM3AQ9Y4C1 1321 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 AFPP02771 609 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 SERPING1P05155 500 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 CASP4P49662 377 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 PPFIA1Q13136 1202 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 IFI16Q16666 785 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 BCAS3Q9H6U6 928 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 PVALEFA0A1B0GWK0 134 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 MED24O75448 989 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 ALAS1P13196 640 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 KRT5P13647 590 aa13.29□□□□□ -0.28
CCDC88C-211ENST00000556726 CETN1Q12798 172 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms