RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 CXXC1Q9P0U4 656 aaPredicted RBP23.36■■□□□ 1.33
VTI1B-205ENST00000555543 SLC9A2Q9UBY0 812 aa23.36■■□□□ 1.33
VTI1B-205ENST00000555543 STK36Q9NRP7 1315 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 EDIL3O43854 480 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 CDKL5O76039 1030 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 SMAD3P84022 425 aaKnown RBP23.35■■□□□ 1.33
VTI1B-205ENST00000555543 RBL2Q08999 1139 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 PTK7Q13308 1070 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 OTOP2Q7RTS6 562 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 PLA2G4DQ86XP0 818 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 CCDC155Q8N6L0 562 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 RETREG2Q8NC44 543 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 HERVK_113Q902F9 699 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 UIMC1Q96RL1 719 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 RNPEPQ9H4A4 650 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 ZNF215Q9UL58 517 aaPredicted RBP23.35■■□□□ 1.33
VTI1B-205ENST00000555543 PCDHA4Q9UN74 947 aa23.35■■□□□ 1.33
VTI1B-205ENST00000555543 C17orf102A2RUQ5 167 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 FGBP02675 491 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 CKBP12277 381 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 SERINC5Q86VE9 423 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 DEFB123Q8N688 67 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 AFAP1L1Q8TED9 768 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 GTF3C6Q969F1 213 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 PCYT2Q99447 389 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 KIF2CQ99661 725 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 SDF4Q9BRK5 362 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 SETD4Q9NVD3 440 aa23.34■■□□□ 1.33
VTI1B-205ENST00000555543 M0R2N6 131 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 TREHO43280 583 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 CCNE2O96020 404 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 SELPP16109 830 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 MARK3P27448 753 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 ACTR2P61160 394 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 GPNMBQ14956 572 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 TRAF7Q6Q0C0 670 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 LRRC8DQ7L1W4 858 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 RPUSD2Q8IZ73 545 aaKnown RBP23.33■■□□□ 1.33
VTI1B-205ENST00000555543 DAGLBQ8NCG7 672 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 ATP6V0A1Q93050 837 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 GJB4Q9NTQ9 266 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 KCNJ14Q9UNX9 436 aa23.33■■□□□ 1.33
VTI1B-205ENST00000555543 EMSYQ7Z589 1322 aa23.33■■□□□ 1.32
VTI1B-205ENST00000555543 DDX39AO00148 427 aaKnown RBP23.32■■□□□ 1.32
VTI1B-205ENST00000555543 DHX15O43143 795 aaKnown RBP23.32■■□□□ 1.32
VTI1B-205ENST00000555543 LGR5O75473 907 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 CIITAP33076 1130 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 RFC2P35250 354 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 ST3GAL1Q11201 340 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 BLIDQ8IZY5 108 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 LMBR1Q8WVP7 490 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 LENG9Q96B70 501 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 CHD9Q3L8U1 2897 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 TET1Q8NFU7 2136 aa23.32■■□□□ 1.32
VTI1B-205ENST00000555543 GRXCR1A8MXD5 290 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 PFKMP08237 780 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 FDPSP14324 419 aaKnown RBP23.31■■□□□ 1.32
VTI1B-205ENST00000555543 ADAM17P78536 824 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 SETQ01105 290 aaPredicted RBP23.31■■□□□ 1.32
VTI1B-205ENST00000555543 PRR16Q569H4 304 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 ZNF618Q5T7W0 954 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 FAM177A1Q8N128 213 aaPredicted RBP23.31■■□□□ 1.32
VTI1B-205ENST00000555543 GLG1Q92896 1179 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 PHF20Q9BVI0 1012 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 ERAP1Q9NZ08 941 aa23.31■■□□□ 1.32
VTI1B-205ENST00000555543 ORC3Q9UBD5 711 aaPredicted RBP23.31■■□□□ 1.32
VTI1B-205ENST00000555543 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.3■■□□□ 1.32
VTI1B-205ENST00000555543 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.3■■□□□ 1.32
VTI1B-205ENST00000555543 IPO5O00410 1097 aaKnown RBP23.3■■□□□ 1.32
VTI1B-205ENST00000555543 NSUN7Q8NE18 718 aaKnown RBP23.3■■□□□ 1.32
VTI1B-205ENST00000555543 TBCKQ8TEA7 893 aa23.3■■□□□ 1.32
VTI1B-205ENST00000555543 SMARCAD1Q9H4L7 1026 aa23.3■■□□□ 1.32
VTI1B-205ENST00000555543 MTMR10Q9NXD2 777 aa23.3■■□□□ 1.32
VTI1B-205ENST00000555543 CDH23Q9H251 3354 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 NBNO60934 754 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 ATG7O95352 703 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 MBTPS1Q14703 1052 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 GALNT17Q6IS24 598 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 FAM161BQ96MY7 647 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 ZNF577Q9BSK1 485 aa23.29■■□□□ 1.32
VTI1B-205ENST00000555543 MTIF3Q9H2K0 278 aaKnown RBP23.29■■□□□ 1.32
VTI1B-205ENST00000555543 ZBBXA8MT70 800 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 JAK2O60674 1132 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 DNAJB2P25686 324 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 THPOP40225 353 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 PBX2P40425 430 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 PPFIA1Q13136 1202 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 C22orf23Q9BZE7 217 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 FTOQ9C0B1 505 aaKnown RBP eCLIP23.28■■□□□ 1.32
VTI1B-205ENST00000555543 TTYH1Q9H313 450 aaPredicted RBP23.28■■□□□ 1.32
VTI1B-205ENST00000555543 COL6A3P12111 3177 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 NRCAMQ92823 1304 aa23.28■■□□□ 1.32
VTI1B-205ENST00000555543 IGKV6D-21A0A0A0MT36 114 aa23.27■■□□□ 1.32
VTI1B-205ENST00000555543 CXCL10P02778 98 aa23.27■■□□□ 1.32
VTI1B-205ENST00000555543 GNAT1P11488 350 aa23.27■■□□□ 1.32
VTI1B-205ENST00000555543 RBM25P49756 843 aaKnown RBP23.27■■□□□ 1.32
VTI1B-205ENST00000555543 USP11P51784 963 aa23.27■■□□□ 1.32
VTI1B-205ENST00000555543 GRIK4Q16099 956 aa23.27■■□□□ 1.32
VTI1B-205ENST00000555543 TCTN1Q2MV58 587 aa23.27■■□□□ 1.32
VTI1B-205ENST00000555543 ZNF697Q5TEC3 545 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms