RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CLDND1Q9NY35 253 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 LMTK3Q96Q04 1460 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 PRDM2Q13029 1718 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 TTBK1Q5TCY1 1321 aaPredicted RBP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 TRAV20A0A0B4J274 112 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 ESYT3A0FGR9 886 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 ENPP3O14638 875 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 HGSO14964 777 aaPredicted RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 CLSTN1O94985 981 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 LTFP02788 710 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 CANXP27824 592 aaKnown RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 MLLT6P55198 1093 aaPredicted RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 ZXDAP98168 799 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 KCNAB2Q13303 367 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 SQSTM1Q13501 440 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 RGL3Q3MIN7 710 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 STEAP3Q658P3 488 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 TEPPQ6URK8 271 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 HOMER1Q86YM7 354 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 FAM126BQ8IXS8 530 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 ZSWIM2Q8NEG5 633 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 APPBP2Q92624 585 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 OSBP2Q969R2 916 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 CCDC140Q96MF4 163 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 IPO9Q96P70 1041 aaKnown RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 CDC6Q99741 560 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 C1QTNF3Q9BXJ4 246 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 USP40Q9NVE5 1235 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 FANCLQ9NW38 375 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 TELO2Q9Y4R8 837 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 PTCH2Q9Y6C5 1203 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 KDM6BO15054 1643 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 ASXL2Q76L83 1435 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 PEG3Q9GZU2 1588 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 SNAPC4Q5SXM2 1469 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 CYR61O00622 381 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 PRODHO43272 600 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 AKAP8O43823 692 aaKnown RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 CDC45O75419 566 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 FGFR1P11362 822 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 HSD3B2P26439 372 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 KRTAP10-7P60409 375 aaPredicted RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 TBC1D10BQ4KMP7 808 aaPredicted RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 EMC4Q5J8M3 183 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 TTLL7Q6ZT98 887 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 USP53Q70EK8 1073 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 PROSER1Q86XN7 944 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 SCUBE1Q8IWY4 988 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 TXNDC5Q8NBS9 432 aaKnown RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 PIP4K2CQ8TBX8 421 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 SORCS2Q96PQ0 1159 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 DHRS4Q9BTZ2 278 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 SSBP3Q9BWW4 388 aaPredicted RBP2.21□□□□□ -2.06
PRPF39-208ENST00000554785 TMEM260Q9NX78 707 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 ZNF652Q9Y2D9 606 aa2.21□□□□□ -2.06
PRPF39-208ENST00000554785 GAPVD1Q14C86 1478 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TDRD9Q8NDG6 1382 aaKnown RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TRBV23-1A0A0A0MS06 115 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 CCDC163A0A0D9SF12 145 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 H7BY64 318 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 SLC27A2O14975 620 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 NKRFO15226 690 aaKnown RBP eCLIP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 MYO1BO43795 1136 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 B4GALT3O60512 393 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 DGKIO75912 1065 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 PABPC1P11940 636 aaKnown RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 COL6A2P12110 1019 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TNFRSF1AP19438 455 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 IL13P35225 146 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 GDF5P43026 501 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 GTF2A2P52657 109 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 GJA9P57773 515 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 GRIN1Q05586 938 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 MAP4K2Q12851 820 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 FAM209AQ5JX71 171 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 FOXB2Q5VYV0 432 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 EGFLAMQ63HQ2 1017 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 CPZQ66K79 652 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TMC5Q6UXY8 1006 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 NSMFQ6X4W1 530 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 C16orf86Q6ZW13 317 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 ZCCHC14Q8WYQ9 949 aaKnown RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 KCTD13Q8WZ19 329 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 MBD6Q96DN6 1003 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TOE1Q96GM8 510 aaKnown RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 SAMD11Q96NU1 681 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 KCNJ15Q99712 375 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 PHF20Q9BVI0 1012 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 KRTAP4-4Q9BYR3 166 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 KRTAP3-1Q9BYR8 98 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 SLITRK6Q9H5Y7 841 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 DTLQ9NZJ0 730 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 MYOTQ9UBF9 498 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 INVSQ9Y283 1065 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 PCDHB4Q9Y5E5 795 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 IFT140Q96RY7 1462 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 RAD54L2Q9Y4B4 1467 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TOPBP1Q92547 1522 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TCRBV5S4A2TA0A5A2 114 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 ASMTLO95671 621 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms