RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 C17orf102A2RUQ5 167 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 ZNF213O14771 459 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 PPP1R11O60927 126 aaPredicted RBP13.12□□□□□ -0.31
VPS33B-204ENST00000554660 PRPF40AO75400 957 aaKnown RBP13.12□□□□□ -0.31
VPS33B-204ENST00000554660 UPP2O95045 317 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 ALADP13716 330 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 NCLP19338 710 aaKnown RBP13.12□□□□□ -0.31
VPS33B-204ENST00000554660 HOXA13P31271 388 aaPredicted RBP13.12□□□□□ -0.31
VPS33B-204ENST00000554660 HSD17B4P51659 736 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 SP2Q02086 613 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 GPM6BQ13491 265 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 PKP1Q13835 747 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 CELF3Q5SZQ8 465 aaKnown RBP13.12□□□□□ -0.31
VPS33B-204ENST00000554660 IQCA1Q86XH1 822 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 FAM184AQ8NB25 1140 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 GPT2Q8TD30 523 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 ATP6V0A1Q93050 837 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 ZSCAN10Q96SZ4 725 aaPredicted RBP13.12□□□□□ -0.31
VPS33B-204ENST00000554660 C16orf70Q9BSU1 422 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 LIMCH1Q9UPQ0 1083 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 MYH7BA7E2Y1 1941 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.11□□□□□ -0.31
VPS33B-204ENST00000554660 H3BNC9 293 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 TREHO43280 583 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 DCXO43602 365 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 CSPG5O95196 566 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 PARP1P09874 1014 aaKnown RBP13.11□□□□□ -0.31
VPS33B-204ENST00000554660 SMIM10L2AP0DMW4 78 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 SMIM10L2BP0DMW5 78 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 ZP2Q05996 745 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 PGM5Q15124 567 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 UVSSAQ2YD98 709 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 POTEDQ86YR6 584 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 STAG2Q8N3U4 1231 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 SEPT8Q92599 483 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 ANKS1AQ92625 1134 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 PABPC5Q96DU9 382 aaKnown RBP13.11□□□□□ -0.31
VPS33B-204ENST00000554660 SAMD11Q96NU1 681 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 AMNQ9BXJ7 453 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 IFIH1Q9BYX4 1025 aaKnown RBP13.11□□□□□ -0.31
VPS33B-204ENST00000554660 CTNNA3Q9UI47 895 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 SNX14Q9Y5W7 946 aa13.11□□□□□ -0.31
VPS33B-204ENST00000554660 PIEZO1Q92508 2521 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 C5orf42Q9H799 3197 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 PPFIA4O75335 1185 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 LGALS2P05162 132 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 HOXC8P31273 242 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 NHLH1Q02575 133 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 GHRHRQ02643 423 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 CLUL1Q15846 466 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 PUS10Q3MIT2 529 aaKnown RBP13.1□□□□□ -0.31
VPS33B-204ENST00000554660 TRIM50Q86XT4 487 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 TMEM192Q8IY95 271 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 TOP1MTQ969P6 601 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 NSUN3Q9H649 340 aaKnown RBP13.1□□□□□ -0.31
VPS33B-204ENST00000554660 BCAS3Q9H6U6 928 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 CLDND1Q9NY35 253 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 RALGAPA2Q2PPJ7 1873 aa13.1□□□□□ -0.31
VPS33B-204ENST00000554660 H3BRB1 525 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 TPM2P07951 284 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 CTNNB1P35222 781 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 COL19A1Q14993 1142 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 CCDC178Q5BJE1 867 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 RPAINQ86UA6 219 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 VSIG10LQ86VR7 867 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 HOMER1Q86YM7 354 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 FBXL18Q96ME1 805 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 RNPEPQ9H4A4 650 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 TUT1Q9H6E5 874 aaKnown RBP13.09□□□□□ -0.31
VPS33B-204ENST00000554660 MLXIPQ9HAP2 919 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 DIAPH3Q9NSV4 1193 aa13.09□□□□□ -0.31
VPS33B-204ENST00000554660 NOL7Q9UMY1 257 aaKnown RBP13.09□□□□□ -0.31
VPS33B-204ENST00000554660 POTEB3A0JP26 581 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 KLRF2D3W0D1 207 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 ZBTB5O15062 677 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 ZNF500O60304 480 aaPredicted RBP13.08□□□□□ -0.32
VPS33B-204ENST00000554660 CCND2P30279 289 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 IRS1P35568 1242 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 KCNV1Q6PIU1 500 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 POTEBQ6S5H4 581 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 CWC27Q6UX04 472 aaKnown RBP13.08□□□□□ -0.32
VPS33B-204ENST00000554660 STOX1Q6ZVD7 989 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 FCHSD1Q86WN1 690 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 ADHFE1Q8IWW8 467 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 UBAC1Q9BSL1 405 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 SETD4Q9NVD3 440 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 TMEM63CQ9P1W3 806 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 ZSWIM5Q9P217 1185 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 TELO2Q9Y4R8 837 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 PCDHA1Q9Y5I3 950 aa13.08□□□□□ -0.32
VPS33B-204ENST00000554660 NOP56O00567 594 aaKnown RBP13.07□□□□□ -0.32
VPS33B-204ENST00000554660 LINC00271P0C7V0 271 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 ZSCAN22P10073 491 aaPredicted RBP13.07□□□□□ -0.32
VPS33B-204ENST00000554660 PSMA5P28066 241 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 LTBRP36941 435 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 DLX2Q07687 328 aaPredicted RBP13.07□□□□□ -0.32
VPS33B-204ENST00000554660 SLC35G1Q2M3R5 365 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 TSGA10IPQ3SY00 556 aa13.07□□□□□ -0.32
VPS33B-204ENST00000554660 IFIT1BQ5T764 474 aaKnown RBP13.07□□□□□ -0.32
VPS33B-204ENST00000554660 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms