RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZNF341Q9BYN7 854 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 NFU1Q9UMS0 254 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 CEP83Q9Y592 693 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 PIK3C2AO00443 1686 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 CCT5P48643 541 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 DCUN1D2Q6PH85 259 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 MED4Q9NPJ6 270 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 ANKFY1Q9P2R3 1169 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.11■□□□□ 0.33
CUX1-211ENST00000546411 IFNB1P01574 187 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 TFRCP02786 760 aaKnown RBP17.11■□□□□ 0.33
CUX1-211ENST00000546411 FMNL3Q8IVF7 1028 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 UBE2TQ9NPD8 197 aaPredicted RBP17.11■□□□□ 0.33
CUX1-211ENST00000546411 MAP3K9P80192 1104 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 NFIAQ12857 509 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 UAP1Q16222 522 aaPredicted RBP17.1■□□□□ 0.33
CUX1-211ENST00000546411 CAPN12Q6ZSI9 719 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 NACC1Q96RE7 527 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 NEBLO76041 1014 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 BMP6P22004 513 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 TRPC3Q13507 836 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 KCNB1Q14721 858 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 RC3H1Q5TC82 1133 aaKnown RBP17.1■□□□□ 0.33
CUX1-211ENST00000546411 C16orf86Q6ZW13 317 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 EEPD1Q7L9B9 569 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 FBXL16Q8N461 479 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 CAPN11Q9UMQ6 739 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 KNDC1Q76NI1 1749 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 MON2Q7Z3U7 1717 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 RHOBTB3O94955 611 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 CDC42EP5Q6NZY7 148 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 NOA1Q8NC60 698 aaKnown RBP17.1■□□□□ 0.33
CUX1-211ENST00000546411 MMS19Q96T76 1030 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 CAPS2Q9BXY5 557 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 ZMYND12Q9H0C1 365 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 POLLQ9UGP5 575 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 BUB1BO60566 1050 aaPredicted RBP17.1■□□□□ 0.33
CUX1-211ENST00000546411 LIG4P49917 911 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 IRX5P78411 483 aaPredicted RBP17.1■□□□□ 0.33
CUX1-211ENST00000546411 GRIK5Q16478 980 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 MCTP2Q6DN12 878 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 DYDC2Q96IM9 177 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 IL17RBQ9NRM6 502 aa17.1■□□□□ 0.33
CUX1-211ENST00000546411 FOXP2O15409 715 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 SLC37A4O43826 429 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 PLEKP08567 350 aaPredicted RBP17.09■□□□□ 0.33
CUX1-211ENST00000546411 ADRA2BP18089 450 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 HNRNPH2P55795 449 aaKnown RBP17.09■□□□□ 0.33
CUX1-211ENST00000546411 VPS72Q15906 364 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 TTC31Q49AM3 519 aaPredicted RBP17.09■□□□□ 0.33
CUX1-211ENST00000546411 RUFY4Q6ZNE9 571 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 TRIM49P0CI25 452 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 TRIM49CP0CI26 452 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 GRM1Q13255 1194 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 ANKRD35Q8N283 1001 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 GIMAP8Q8ND71 665 aaPredicted RBP17.09■□□□□ 0.33
CUX1-211ENST00000546411 DEPTORQ8TB45 409 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 AGTPBP1Q9UPW5 1226 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 ZBTB12Q9Y330 459 aaPredicted RBP17.09■□□□□ 0.33
CUX1-211ENST00000546411 DUSP10Q9Y6W6 482 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 MORC2Q9Y6X9 1032 aaPredicted RBP17.09■□□□□ 0.33
CUX1-211ENST00000546411 ATP8B1O43520 1251 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 NR3C1P04150 777 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 RCSD1Q6JBY9 416 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 GPATCH11Q8N954 259 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 CABS1Q96KC9 395 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 WDR11Q9BZH6 1224 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 JMJD4Q9H9V9 463 aa17.09■□□□□ 0.33
CUX1-211ENST00000546411 INPP5BP32019 993 aa17.08■□□□□ 0.33
CUX1-211ENST00000546411 PEX3P56589 373 aa17.08■□□□□ 0.33
CUX1-211ENST00000546411 TNS2Q63HR2 1409 aa17.08■□□□□ 0.33
CUX1-211ENST00000546411 ZNF277Q9NRM2 450 aaPredicted RBP17.08■□□□□ 0.33
CUX1-211ENST00000546411 SLURP2P0DP57 97 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 ACTN1P12814 892 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 SP8Q8IXZ3 490 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 NKX2-3Q8TAU0 364 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 MAGOHBQ96A72 148 aaKnown RBP17.08■□□□□ 0.32
CUX1-211ENST00000546411 CEP170P1Q96L14 293 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 GPR75-ASB3A0A0A6YYF3 556 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 LIG3P49916 1009 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 ERVK-24P63145 666 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 DMP1Q13316 513 aaPredicted RBP17.08■□□□□ 0.32
CUX1-211ENST00000546411 TNFAIP1Q13829 316 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 OTUD6AQ7L8S5 288 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 ATP8A1Q9Y2Q0 1164 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 RIC1Q4ADV7 1423 aa17.08■□□□□ 0.32
CUX1-211ENST00000546411 FERP16591 822 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 KCNJ6P48051 423 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 PLTPP55058 493 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 ANKS4BQ8N8V4 417 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 PROCA1Q8NCQ7 364 aaPredicted RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 SEPT9Q9UHD8 586 aaPredicted RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 CAMTA1Q9Y6Y1 1673 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 ABCB11O95342 1321 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 WNT7AO00755 349 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 NDUFB10O96000 172 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 NMT1P30419 496 aaKnown RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 PMS1P54277 932 aaKnown RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 ANKRD42Q8N9B4 389 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 MPHOSPH6Q99547 160 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms