RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 NSUN7Q8NE18 718 aaKnown RBP13.51□□□□□ -0.25
YBX3-217ENST00000546164 CAGE1Q8TC20 777 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 PPP1R13LQ8WUF5 828 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 SDF4Q9BRK5 362 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 ALG1Q9BT22 464 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 PHF20Q9BVI0 1012 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 IL23AQ9NPF7 189 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 SLC9A2Q9UBY0 812 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 LIMCH1Q9UPQ0 1083 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 NOD1Q9Y239 953 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 EMSYQ7Z589 1322 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 SOX1O00570 391 aaPredicted RBP13.5□□□□□ -0.25
YBX3-217ENST00000546164 LGR5O75473 907 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 CHMP4BP1P59074 171 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 SP4Q02446 784 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 ST3GAL1Q11201 340 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 PTK7Q13308 1070 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 RABEP1Q15276 862 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 GPR153Q6NV75 609 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 PSRC1Q6PGN9 363 aaPredicted RBP13.5□□□□□ -0.25
YBX3-217ENST00000546164 C16orf59Q7L2K0 433 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 TRIM50Q86XT4 487 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 CCDC155Q8N6L0 562 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 LENG9Q96B70 501 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 UPF2Q9HAU5 1272 aaKnown RBP13.5□□□□□ -0.25
YBX3-217ENST00000546164 PKD2L1Q9P0L9 805 aa13.5□□□□□ -0.25
YBX3-217ENST00000546164 IPO5O00410 1097 aaKnown RBP13.49□□□□□ -0.25
YBX3-217ENST00000546164 DHX15O43143 795 aaKnown RBP13.49□□□□□ -0.25
YBX3-217ENST00000546164 ATG7O95352 703 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 SLC34A2O95436 690 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 PFKMP08237 780 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 SMIM10L2AP0DMW4 78 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 SMIM10L2BP0DMW5 78 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 RFC2P35250 354 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 CCL23P55773 120 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 ACTR2P61160 394 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 HIC1Q14526 733 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 TMEM240Q5SV17 173 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 UTP14CQ5TAP6 766 aaKnown RBP13.49□□□□□ -0.25
YBX3-217ENST00000546164 RASIP1Q5U651 963 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 MOXD1Q6UVY6 613 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 KRT25Q7Z3Z0 450 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 TBCKQ8TEA7 893 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 AFAP1L1Q8TED9 768 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 DHX38Q92620 1227 aaKnown RBP13.49□□□□□ -0.25
YBX3-217ENST00000546164 VWCEQ96DN2 955 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 ZSCAN31Q96LW9 406 aaPredicted RBP13.49□□□□□ -0.25
YBX3-217ENST00000546164 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.49□□□□□ -0.252e-23■□□□□ 10.4
YBX3-217ENST00000546164 SMARCAD1Q9H4L7 1026 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 TBC1D22BQ9NU19 505 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 ERAP1Q9NZ08 941 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 KCNJ14Q9UNX9 436 aa13.49□□□□□ -0.25
YBX3-217ENST00000546164 NRCAMQ92823 1304 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 CYP3A7-CYP3A51PA0A087WV96 503 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 C17orf102A2RUQ5 167 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 C19orf67A6NJJ6 358 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 CCNE2O96020 404 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 IQCF3P0C7M6 154 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 GNAT1P11488 350 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 CYP3A7P24462 503 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 ADAM17P78536 824 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 TRIM71Q2Q1W2 868 aaKnown RBP13.48□□□□□ -0.25
YBX3-217ENST00000546164 PRR16Q569H4 304 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 SERINC5Q86VE9 423 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 RPUSD2Q8IZ73 545 aaKnown RBP13.48□□□□□ -0.25
YBX3-217ENST00000546164 RETREG2Q8NC44 543 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 RNPC3Q96LT9 517 aaKnown RBP13.48□□□□□ -0.25
YBX3-217ENST00000546164 MBOAT7Q96N66 472 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 PCYT2Q99447 389 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 LLPHQ9BRT6 129 aaKnown RBP13.48□□□□□ -0.25
YBX3-217ENST00000546164 ZNF577Q9BSK1 485 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 RNPEPQ9H4A4 650 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 SH2B1Q9NRF2 756 aaPredicted RBP13.48□□□□□ -0.25
YBX3-217ENST00000546164 DOCK5Q9H7D0 1870 aa13.48□□□□□ -0.25
YBX3-217ENST00000546164 IGKV6D-21A0A0A0MT36 114 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 JAK2O60674 1132 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 PARNO95453 639 aaKnown RBP13.47□□□□□ -0.25
YBX3-217ENST00000546164 SELPP16109 830 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 ZNF200P98182 395 aaPredicted RBP13.47□□□□□ -0.25
YBX3-217ENST00000546164 NONOQ15233 471 aaKnown RBP eCLIP13.47□□□□□ -0.25
YBX3-217ENST00000546164 Q4G0T1 1027 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 ABHD15Q6UXT9 468 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 PLPPR4Q7Z2D5 763 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 HERVK_113Q902F9 699 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 GLG1Q92896 1179 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 ATP6V0A1Q93050 837 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 SCLYQ96I15 445 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 LRCH3Q96II8 777 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 TBC1D32Q96NH3 1257 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 GJB4Q9NTQ9 266 aa13.47□□□□□ -0.25
YBX3-217ENST00000546164 MSH4O15457 936 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 DTNBO60941 627 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 CAND2O75155 1236 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 FGBP02675 491 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 ACRP10323 421 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 CKBP12277 381 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 SLC26A2P50443 739 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 SMAD3P84022 425 aaKnown RBP13.46□□□□□ -0.25
YBX3-217ENST00000546164 KRT76Q01546 638 aa13.46□□□□□ -0.25
YBX3-217ENST00000546164 ZNF746Q6NUN9 644 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms