RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 GTF3C6Q969F1 213 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 LENG9Q96B70 501 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 SCLYQ96I15 445 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 PCYT2Q99447 389 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 JPH1Q9HDC5 661 aaPredicted RBP13.02□□□□□ -0.33
YBX3-216ENST00000544622 SLC9A2Q9UBY0 812 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 LGR5O75473 907 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 ACRP10323 421 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 NLRP5P59047 1200 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 CHMP4BP1P59074 171 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 BFSP2Q13515 415 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 SERINC5Q86VE9 423 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 TRIM50Q86XT4 487 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 NECAB1Q8N987 351 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 NSUN7Q8NE18 718 aaKnown RBP13.01□□□□□ -0.33
YBX3-216ENST00000544622 HERVK_113Q902F9 699 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 WNT8BQ93098 351 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 DOCK5Q9H7D0 1870 aa13.01□□□□□ -0.33
YBX3-216ENST00000544622 EMSYQ7Z589 1322 aa13□□□□□ -0.33
YBX3-216ENST00000544622 CYP3A7-CYP3A51PA0A087WV96 503 aa13□□□□□ -0.33
YBX3-216ENST00000544622 IPO5O00410 1097 aaKnown RBP13□□□□□ -0.33
YBX3-216ENST00000544622 DTNBO60941 627 aa13□□□□□ -0.33
YBX3-216ENST00000544622 CCNE2O96020 404 aa13□□□□□ -0.33
YBX3-216ENST00000544622 PFKMP08237 780 aa13□□□□□ -0.33
YBX3-216ENST00000544622 SMIM10L2AP0DMW4 78 aa13□□□□□ -0.33
YBX3-216ENST00000544622 SMIM10L2BP0DMW5 78 aa13□□□□□ -0.33
YBX3-216ENST00000544622 CKBP12277 381 aa13□□□□□ -0.33
YBX3-216ENST00000544622 CYP3A7P24462 503 aa13□□□□□ -0.33
YBX3-216ENST00000544622 RFC2P35250 354 aa13□□□□□ -0.33
YBX3-216ENST00000544622 ACTR2P61160 394 aa13□□□□□ -0.33
YBX3-216ENST00000544622 SMAD3P84022 425 aaKnown RBP13□□□□□ -0.33
YBX3-216ENST00000544622 SP4Q02446 784 aa13□□□□□ -0.33
YBX3-216ENST00000544622 FAM109BQ6ICB4 259 aaPredicted RBP13□□□□□ -0.33
YBX3-216ENST00000544622 PSRC1Q6PGN9 363 aaPredicted RBP13□□□□□ -0.33
YBX3-216ENST00000544622 PLA2G4DQ86XP0 818 aa13□□□□□ -0.33
YBX3-216ENST00000544622 RPUSD2Q8IZ73 545 aaKnown RBP13□□□□□ -0.33
YBX3-216ENST00000544622 BLIDQ8IZY5 108 aa13□□□□□ -0.33
YBX3-216ENST00000544622 AFAP1L1Q8TED9 768 aa13□□□□□ -0.33
YBX3-216ENST00000544622 C22orf23Q9BZE7 217 aa13□□□□□ -0.33
YBX3-216ENST00000544622 GJB4Q9NTQ9 266 aa13□□□□□ -0.33
YBX3-216ENST00000544622 PKD2L1Q9P0L9 805 aa13□□□□□ -0.33
YBX3-216ENST00000544622 NOD1Q9Y239 953 aa13□□□□□ -0.33
YBX3-216ENST00000544622 CHD9Q3L8U1 2897 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 NRCAMQ92823 1304 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 C17orf102A2RUQ5 167 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 TREHO43280 583 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 FGBP02675 491 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 ZNF76P36508 570 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 SETQ01105 290 aaPredicted RBP12.99□□□□□ -0.33
YBX3-216ENST00000544622 UTP14CQ5TAP6 766 aaKnown RBP12.99□□□□□ -0.33
YBX3-216ENST00000544622 ABHD15Q6UXT9 468 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 PLPPR4Q7Z2D5 763 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 TBCKQ8TEA7 893 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 RNPC3Q96LT9 517 aaKnown RBP12.99□□□□□ -0.33
YBX3-216ENST00000544622 MBOAT7Q96N66 472 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 SDF4Q9BRK5 362 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 SMARCAD1Q9H4L7 1026 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 SETD4Q9NVD3 440 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 ERAP1Q9NZ08 941 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 CXXC1Q9P0U4 656 aaPredicted RBP12.99□□□□□ -0.33
YBX3-216ENST00000544622 ORC3Q9UBD5 711 aaPredicted RBP12.99□□□□□ -0.33
YBX3-216ENST00000544622 ZNF215Q9UL58 517 aaPredicted RBP12.99□□□□□ -0.33
YBX3-216ENST00000544622 KCNJ14Q9UNX9 436 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 LIMCH1Q9UPQ0 1083 aa12.99□□□□□ -0.33
YBX3-216ENST00000544622 EYSQ5T1H1 3165 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.98□□□□□ -0.33
YBX3-216ENST00000544622 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.98□□□□□ -0.33
YBX3-216ENST00000544622 MBLAC1A4D2B0 266 aaPredicted RBP12.98□□□□□ -0.33
YBX3-216ENST00000544622 PARNO95453 639 aaKnown RBP12.98□□□□□ -0.33
YBX3-216ENST00000544622 CXCL10P02778 98 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 SELPP16109 830 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 Q4G0T1 1027 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 PRR16Q569H4 304 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 MARCH8Q5T0T0 291 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 MOXD1Q6UVY6 613 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 RPAINQ86UA6 219 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 PIAS4Q8N2W9 510 aaPredicted RBP12.98□□□□□ -0.33
YBX3-216ENST00000544622 CCDC155Q8N6L0 562 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 RETREG2Q8NC44 543 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 LMBR1Q8WVP7 490 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 TNFRSF25Q93038 417 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 ATP6V0A1Q93050 837 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 ZNF577Q9BSK1 485 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 TBC1D22BQ9NU19 505 aa12.98□□□□□ -0.33
YBX3-216ENST00000544622 SPTBN5Q9NRC6 3674 aaKnown RBP12.98□□□□□ -0.33
YBX3-216ENST00000544622 MSH4O15457 936 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 JAK2O60674 1132 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 NBNO60934 754 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 GNAT1P11488 350 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 XBP1P17861 261 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 ATP4AP20648 1035 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 SLC26A2P50443 739 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 STAT5BP51692 787 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 MBTPS1Q14703 1052 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 ZNF618Q5T7W0 954 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 B3GNT9Q6UX72 402 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 LRRC8DQ7L1W4 858 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 OTOP2Q7RTS6 562 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 IL27Q8NEV9 243 aa12.97□□□□□ -0.33
YBX3-216ENST00000544622 OXER1Q8TDS5 423 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms