RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ZBTB39O15060 712 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 TFRCP02786 760 aaKnown RBP18.07■□□□□ 0.48
COL4A1-204ENST00000543140 CYP27A1Q02318 531 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 OTOP1Q7RTM1 612 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 RUSC1Q9BVN2 902 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 KCTD10Q9H3F6 313 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 ATAD5Q96QE3 1844 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 CTAGE9A4FU28 777 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 TGFB2P61812 414 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 FIGNQ5HY92 759 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 SAMD7Q7Z3H4 446 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 CCPG1Q9ULG6 757 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 RABGAP1Q9Y3P9 1069 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 A0A1W2PQJ5 194 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 SFI1A8K8P3 1242 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 NFKBIEO00221 500 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 HOXA7P31268 230 aaPredicted RBP18.06■□□□□ 0.48
COL4A1-204ENST00000543140 TEX35Q5T0J7 233 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 KIAA1328Q86T90 577 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 CPXCR1Q8N123 301 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 DYDC2Q96IM9 177 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 ABCB11O95342 1321 aa18.06■□□□□ 0.48
COL4A1-204ENST00000543140 GAS7O60861 476 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 ARP10275 920 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 MAP3K10Q02779 954 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 ADAM9Q13443 819 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 CEP55Q53EZ4 464 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 CCDC122Q5T0U0 273 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 TEPSINQ96N21 525 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 POLR3CQ9BUI4 534 aaPredicted RBP18.05■□□□□ 0.48
COL4A1-204ENST00000543140 PUF60Q9UHX1 559 aaKnown RBP18.05■□□□□ 0.48
COL4A1-204ENST00000543140 PSMD10O75832 226 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 MYBP10242 640 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 CYLC1P35663 651 aaPredicted RBP18.05■□□□□ 0.48
COL4A1-204ENST00000543140 PTGER2P43116 358 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 TNIP1Q15025 636 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 RRAGAQ7L523 313 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 HSD17B14Q9BPX1 270 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 CRACR2AQ9BSW2 395 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 PKD2L1Q9P0L9 805 aa18.05■□□□□ 0.48
COL4A1-204ENST00000543140 FER1L6Q2WGJ9 1857 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 RCCD1A6NED2 376 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 PLA2G6O60733 806 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 PRPF6O94906 941 aaKnown RBP18.04■□□□□ 0.48
COL4A1-204ENST00000543140 SLITRK3O94933 977 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 TBC1D10BQ4KMP7 808 aaPredicted RBP18.04■□□□□ 0.48
COL4A1-204ENST00000543140 NAPGQ99747 312 aaPredicted RBP18.04■□□□□ 0.48
COL4A1-204ENST00000543140 ZNF577Q9BSK1 485 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 HOMER2Q9NSB8 354 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 BCS1LQ9Y276 419 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 GJA3Q9Y6H8 435 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 LRRC53A6NM62 1247 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 NFIBO00712 420 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 EYA4O95677 639 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 H2AFXP16104 143 aaPredicted RBP18.04■□□□□ 0.48
COL4A1-204ENST00000543140 POLD1P28340 1107 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 HOXD13P35453 343 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 KRT83P78385 493 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 KCNMA1Q12791 1236 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 FOXR2Q6PJQ5 311 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 KRT26Q7Z3Y9 468 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 SLC5A5Q92911 643 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 HOOK2Q96ED9 719 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 CCDC42Q96M95 316 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 CEP63Q96MT8 703 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 LACRTQ9GZZ8 138 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 STK24Q9Y6E0 443 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 ZNF536O15090 1300 aa18.04■□□□□ 0.48
COL4A1-204ENST00000543140 DDX39AO00148 427 aaKnown RBP18.03■□□□□ 0.48
COL4A1-204ENST00000543140 KIF20AO95235 890 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 IPO7O95373 1038 aaKnown RBP18.03■□□□□ 0.48
COL4A1-204ENST00000543140 NR2F2P24468 414 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 APBA1Q02410 837 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 NEK11Q8NG66 645 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 HAUS4Q9H6D7 363 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 NLRC4Q9NPP4 1024 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 ZNF446Q9NWS9 450 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 CDC23Q9UJX2 597 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 PLAGL2Q9UPG8 496 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.03■□□□□ 0.48
COL4A1-204ENST00000543140 DUSP10Q9Y6W6 482 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 TBCAO75347 108 aaKnown RBP18.03■□□□□ 0.48
COL4A1-204ENST00000543140 ICAM1P05362 532 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 RINT1Q6NUQ1 792 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 MICALL2Q8IY33 904 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 CCDC170Q8IYT3 715 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 JAKMIP2Q96AA8 810 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 EHMT1Q9H9B1 1298 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 COL20A1Q9P218 1284 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 ARHGAP20Q9P2F6 1191 aa18.03■□□□□ 0.48
COL4A1-204ENST00000543140 ENC1O14682 589 aa18.02■□□□□ 0.48
COL4A1-204ENST00000543140 GMPSP49915 693 aaPredicted RBP18.02■□□□□ 0.48
COL4A1-204ENST00000543140 CLCN6P51797 869 aa18.02■□□□□ 0.48
COL4A1-204ENST00000543140 KCNA1Q09470 495 aa18.02■□□□□ 0.48
COL4A1-204ENST00000543140 PPP2R5CQ13362 524 aa18.02■□□□□ 0.48
COL4A1-204ENST00000543140 CACNA2D4Q7Z3S7 1137 aa18.02■□□□□ 0.48
COL4A1-204ENST00000543140 PRPF38AQ8NAV1 312 aaKnown RBP18.02■□□□□ 0.48
COL4A1-204ENST00000543140 MYO1AQ9UBC5 1043 aa18.02■□□□□ 0.48
COL4A1-204ENST00000543140 EIF3CLB5ME19 914 aaKnown RBP18.02■□□□□ 0.47
COL4A1-204ENST00000543140 ZNF263O14978 683 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms