RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ATP2B4P23634 1241 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 STAT6P42226 847 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 PPP2R2AP63151 447 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 MFSD4BQ5TF39 518 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 TMEM154Q6P9G4 183 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 ANKS4BQ8N8V4 417 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 KBTBD3Q8NAB2 608 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 SPATA5Q8NB90 893 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 C7orf43Q8WVR3 580 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 RPS6KC1Q96S38 1066 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 GDF3Q9NR23 364 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 ADAM22Q9P0K1 906 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 DUSP10Q9Y6W6 482 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 MACROD2A1Z1Q3 448 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 ZSCAN5CA6NGD5 496 aaPredicted RBP10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 PCK1P35558 622 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 TRIM14Q14142 442 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 TTLL6Q8N841 843 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 OPTNQ96CV9 577 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 EHD2Q9NZN4 543 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 ATXN10Q9UBB4 475 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 LRRC42Q9Y546 428 aa10.37□□□□□ -0.75
CTNNA1-243ENST00000540387 RFC5P40937 340 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 PSMC4P43686 418 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 NCALDP61601 193 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 TGFB2P61812 414 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 KRT83P78385 493 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 DEUP1Q05D60 604 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 SF3A3Q12874 501 aaKnown RBP eCLIP10.36□□□□□ -0.753e-7■■■□□ 16.9
CTNNA1-243ENST00000540387 Q4G0T1 1027 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 ODF2Q5BJF6 829 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 DPP8Q6V1X1 898 aaPredicted RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 CHST3Q7LGC8 479 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 SMCR8Q8TEV9 937 aaPredicted RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 CHMP6Q96FZ7 201 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 FGD4Q96M96 766 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 MAP3K14Q99558 947 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 NDNQ99608 321 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 RANBP17Q9H2T7 1088 aaKnown RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 EPB41L5Q9HCM4 733 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 SERTAD1Q9UHV2 236 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 UTRNP46939 3433 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 COL11A2P13942 1736 aaPredicted RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 IGF2BP3O00425 579 aaKnown RBP eCLIP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 RIMBP2O15034 1052 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 SEMA3EO15041 775 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 PARP1P09874 1014 aaKnown RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 CD44P16070 742 aaKnown RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 SFMBT2Q5VUG0 894 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 LCA5Q86VQ0 697 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 TMTC2Q8N394 836 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 CCDC155Q8N6L0 562 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 PURBQ96QR8 312 aaKnown RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 MTRQ99707 1265 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 TRIM7Q9C029 511 aa10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 RBM12Q9NTZ6 932 aaKnown RBP10.36□□□□□ -0.75
CTNNA1-243ENST00000540387 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.36□□□□□ -0.755e-6■■■□□ 15.4
CTNNA1-243ENST00000540387 ZNF189O75820 626 aaPredicted RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 KRT16P08779 473 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 ZNF24P17028 368 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 EIF4BP23588 611 aaKnown RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 GUCY2DQ02846 1103 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 CUL4BQ13620 913 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 ITIH4Q14624 930 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 KRT31Q15323 416 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 GALNT17Q6IS24 598 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 LRIG3Q6UXM1 1119 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 TRPM8Q7Z2W7 1104 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 APBB1IPQ7Z5R6 666 aaPredicted RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 FAM114A1Q8IWE2 563 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 OR2W6PQ8NHA6 318 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 IFT43Q96FT9 208 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 VPS16Q9H269 839 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 SPON1Q9HCB6 807 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 PLCB1Q9NQ66 1216 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 PIH1D3Q9NQM4 214 aaKnown RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 DLGAP2Q9P1A6 1054 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 JAG2Q9Y219 1238 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 RFX7Q2KHR2 1363 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 GOLGA6L10A0A0M3HER8 536 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 POLR2DO15514 142 aaKnown RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 HEXIM1O94992 359 aaKnown RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 PENKP01210 267 aaPredicted RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 RARAP10276 462 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 DESP17661 470 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 ATP6V1C1P21283 382 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 PAX3P23760 479 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 CXCR5P32302 372 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 KLC1Q07866 573 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 BIRC3Q13489 604 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 KIAA0753Q2KHM9 967 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 FOXB2Q5VYV0 432 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 OR52E8Q6IFG1 317 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 PHC3Q8NDX5 983 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 TRAPPC9Q96Q05 1148 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 PSMB7Q99436 277 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 RNF39Q9H2S5 420 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 DMAP1Q9NPF5 467 aaPredicted RBP10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 SWAP70Q9UH65 585 aa10.35□□□□□ -0.75
CTNNA1-243ENST00000540387 SMAPO00193 183 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms