RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 CHRNA1P02708 482 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 MMP1P03956 469 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 POLR2MP0CAP2 368 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 CAMK1Q14012 370 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 BTG3Q14201 252 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 NEDD9Q14511 834 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 STAG2Q8N3U4 1231 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 ZNF689Q96CS4 500 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 MSLNLQ96KJ4 702 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 GPR20Q99678 358 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 EHMT1Q9H9B1 1298 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 RC3H2Q9HBD1 1191 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 ALG13Q9NP73 1137 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 PLAGL2Q9UPG8 496 aa13.49□□□□□ -0.25
CLSTN3-209ENST00000539982 NRCAMQ92823 1304 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 B4E1Z4 1266 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 LOC730098B7Z3J9 87 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 ICAM3P32942 547 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 NDUFV1P49821 464 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 ZXDAP98168 799 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 ARHGAP4P98171 946 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 TRAF1Q13077 416 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 GNPTABQ3T906 1256 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 NAALADL2Q58DX5 795 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 METTL7BQ6UX53 244 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 CYFIP1Q7L576 1253 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 FCHSD1Q86WN1 690 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 SUGP1Q8IWZ8 645 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 LMBR1Q8WVP7 490 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 P2RX5Q93086 422 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 PPP2R3CQ969Q6 453 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 ZNF215Q9UL58 517 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 ATG2AQ2TAZ0 1938 aa13.48□□□□□ -0.25
CLSTN3-209ENST00000539982 SPATA31C2B4DYI2 1134 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 STAM2O75886 525 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 DGKIO75912 1065 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 GHRP10912 638 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 MRPS9P82933 396 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 TCF15Q12870 199 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 COASYQ13057 564 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 CBX2Q14781 532 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 FBXL6Q8N531 539 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 EFHBQ8N7U6 833 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 INPP4AQ96PE3 977 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 CLEC1BQ9P126 229 aa13.47□□□□□ -0.25
CLSTN3-209ENST00000539982 USP34Q70CQ2 3546 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 PALM3A6NDB9 673 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 CSPG5O95196 566 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 SDSP20132 328 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 DNAJB1P25685 340 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 RRP1P56182 461 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 MGAT3Q09327 533 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 LPIN1Q14693 890 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 IFIT1BQ5T764 474 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 UTP14CQ5TAP6 766 aaKnown RBP13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 TAF2Q6P1X5 1199 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 RSPH3Q86UC2 560 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 TRIM50Q86XT4 487 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 SMRP1Q8NCR6 262 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 SPPL3Q8TCT6 385 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 RILPL2Q969X0 211 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 UBAC1Q9BSL1 405 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 KRT23Q9C075 422 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 MAD2L2Q9UI95 211 aa13.46□□□□□ -0.25
CLSTN3-209ENST00000539982 FIBPO43427 364 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 ITGB1P05556 798 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 SEMA3FQ13275 785 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 RUFY4Q6ZNE9 571 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 SENP7Q9BQF6 1050 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 RTEL1Q9NZ71 1219 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 SUPT16HQ9Y5B9 1047 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 MRPL42Q9Y6G3 142 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 TTC3P53804 2025 aa13.45□□□□□ -0.26
CLSTN3-209ENST00000539982 NRIP1P48552 1158 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 SIGLEC14Q08ET2 396 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 IMMTQ16891 758 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 FBXO47Q5MNV8 452 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 ADGRD2Q7Z7M1 963 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 HOMER1Q86YM7 354 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 CMTR2Q8IYT2 770 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 CRIPAKQ8N1N5 446 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 KLHL23Q8NBE8 558 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 POF1BQ8WVV4 589 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 PIGSQ96S52 555 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 PHF7Q9BWX1 381 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 IRF2BPLQ9H1B7 796 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 RIOX1Q9H6W3 641 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 CNNM2Q9H8M5 875 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 TELO2Q9Y4R8 837 aa13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 ZFHX2Q9C0A1 2572 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-209ENST00000539982 FRMPD4Q14CM0 1322 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 PNMA6FA0A0J9YX94 578 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 GFRA3O60609 400 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 SEC23AQ15436 765 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 SLC35G1Q2M3R5 365 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 TSHZ1Q6ZSZ6 1077 aa13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 RBM23Q86U06 439 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 RTN4RL1Q86UN2 441 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 GIMAP8Q8ND71 665 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-209ENST00000539982 DNAJB3Q8WWF6 145 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms