RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 KIF4AO95239 1232 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 RASA1P20936 1047 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 PSMD2Q13200 908 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 IFI16Q16666 785 aaKnown RBP12.33□□□□□ -0.44
SYNE1-237ENST00000539504 COBLL1Q53SF7 1204 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 PPP4R3AQ6IN85 833 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 VCPKMTQ9H867 229 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 AMACRQ9UHK6 382 aa12.33□□□□□ -0.44
SYNE1-237ENST00000539504 USP17L5A8MUK1 530 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 DAPK3O43293 454 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 SF3B3Q15393 1217 aaKnown RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 UBE2SQ16763 222 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 DCAF17Q5H9S7 520 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 CCDC65Q8IXS2 484 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 CACNA2D3Q8IZS8 1091 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 SLC40A1Q9NP59 571 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 PLCB1Q9NQ66 1216 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 PCDHGC5Q9Y5F6 944 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 NUP98P52948 1817 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 NPHP3-ACAD11A0A0J9YXS1 232 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 PGRMC1O00264 195 aaKnown RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 CETN3O15182 167 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 CUL1Q13616 776 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 ANKRD2Q9GZV1 360 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 LRP5O75197 1615 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 SMIM23A6NLE4 172 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 E9PMD0 336 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 RBAK-RBAKDNI3L0D1 243 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 TULP1O00294 542 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 MAGOHP61326 146 aaKnown RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 PTK2Q05397 1052 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 DHX9Q08211 1270 aaKnown RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 ADAT2Q7Z6V5 191 aaKnown RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 MAGOHBQ96A72 148 aaKnown RBP12.32□□□□□ -0.44
SYNE1-237ENST00000539504 KIAA1024Q9UPX6 916 aa12.32□□□□□ -0.44
SYNE1-237ENST00000539504 PLCH1Q4KWH8 1693 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 TLDC2A0PJX2 215 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 NF2P35240 595 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 CDK8P49336 464 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 KCNH2Q12809 1159 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 ALKBH5Q6P6C2 394 aaKnown RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 GPBP1Q86WP2 473 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 SYN2Q92777 582 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 CEP95Q96GE4 821 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 MTMR9Q96QG7 549 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 FGFBP2Q9BYJ0 223 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 DDX20Q9UHI6 824 aaKnown RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 NOC2LQ9Y3T9 749 aaKnown RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 GNA14O95837 355 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 FXR2P51116 673 aaKnown RBP eCLIP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 SMTNP53814 917 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 ZNF844Q08AG5 666 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 YTHDF3Q7Z739 585 aaKnown RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 NBPF5PQ86XG9 351 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 PBKQ96KB5 322 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 TOGARAM1Q9Y4F4 1720 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 NR2F2P24468 414 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 PPP2R2AP63151 447 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 LRIG3Q6UXM1 1119 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 DAAM2Q86T65 1068 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 LRRC47Q8N1G4 583 aaKnown RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 CCDC26Q8TAB7 109 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 EMILIN3Q9NT22 766 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 HAUS2Q9NVX0 235 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 DDX25Q9UHL0 483 aaKnown RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 PCDHA12Q9UN75 941 aa12.31□□□□□ -0.44
SYNE1-237ENST00000539504 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-237ENST00000539504 ATXN2Q99700 1313 aaKnown RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 PHF20L1A8MW92 1017 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 ITGA4P13612 1032 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 SLC9A1P19634 815 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 USP11P51784 963 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 GSTO1P78417 241 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 MTMR3Q13615 1198 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 E2F5Q15329 346 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 ECM1Q16610 540 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 VPS36Q86VN1 386 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 TEX11Q8IYF3 940 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 SELENOSQ9BQE4 189 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 CELF4Q9BZC1 486 aaKnown RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 ATP8A1Q9Y2Q0 1164 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 TTI1O43156 1089 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 LDHCP07864 332 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 FLT3P36888 993 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 SNCBQ16143 134 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 QPCTQ16769 361 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 GKAP1Q5VSY0 366 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 METTL13Q8N6R0 699 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 ZKSCAN4Q969J2 545 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 SEC16BQ96JE7 1060 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 CEP63Q96MT8 703 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 GPR101Q96P66 508 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 NEUROG2Q9H2A3 272 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 UTP11Q9Y3A2 253 aaKnown RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 FLOT1O75955 427 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 BIRC3Q13489 604 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 UAP1Q16222 522 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 DDB1Q16531 1140 aa12.3□□□□□ -0.44
SYNE1-237ENST00000539504 ZNF571Q7Z3V5 609 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-237ENST00000539504 TRIM59Q8IWR1 403 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms