RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 IRGCQ6NXR0 463 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 TMTC2Q8N394 836 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 RPS6KC1Q96S38 1066 aa11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLSTN3-207ENST00000537408 FAM208AQ9UK61 1670 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 SALL1Q9NSC2 1324 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 STAT6P42226 847 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 GTF2IP78347 998 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 PPARDQ03181 441 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 CMPK2Q5EBM0 449 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 NLGN2Q8NFZ4 835 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 VPS16Q9H269 839 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 RFC5P40937 340 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 TTF1Q15361 905 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF572Q7Z3I7 529 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF589Q86UQ0 364 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 SPICE1Q8N0Z3 855 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 C2orf69Q8N8R5 385 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 UBLCP1Q8WVY7 318 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF653Q96CK0 615 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 UBA5Q9GZZ9 404 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 DBNDD1Q9H9R9 158 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 RHBDL2Q9NX52 303 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 ATP6V0A2Q9Y487 856 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 MYO3BQ8WXR4 1341 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 HLA-DOAP06340 250 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 TIMM10P62072 90 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF34Q8IZ26 560 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 SMCR8Q8TEV9 937 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 SELENOSQ9BQE4 189 aa11.85□□□□□ -0.51
CLSTN3-207ENST00000537408 CCDC166P0CW27 439 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 SKIP12755 728 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 CARSP49589 748 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 COPB1P53618 953 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 ARHGEF6Q15052 776 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 KRT71Q3SY84 523 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 CREG2Q8IUH2 290 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 DNAJC9Q8WXX5 260 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PRCCQ92733 491 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PCMTD1Q96MG8 357 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 MIS12Q9H081 205 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PREBQ9HCU5 417 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 GDF3Q9NR23 364 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 CIDEBQ9UHD4 219 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 SERTAD1Q9UHV2 236 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 SLC12A6Q9UHW9 1150 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 DAAM1Q9Y4D1 1078 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PARP4Q9UKK3 1724 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 ZNF804BA4D1E1 1349 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 UPP2O95045 317 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 LDHBP07195 334 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 ACADSP16219 412 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 HSPA9P38646 679 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 SESN3P58005 492 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PUM3Q15397 648 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 SMC1BQ8NDV3 1235 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 MPHOSPH6Q99547 160 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 CHP1Q99653 195 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 NAPBQ9H115 298 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PDP2Q9P2J9 529 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 DENND2AQ9ULE3 1009 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 LTN1O94822 1766 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 SRGNP10124 158 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PLCG2P16885 1265 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 BMP6P22004 513 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 EIF4BP23588 611 aaKnown RBP11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 HERVK_113P62684 666 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 PODNQ7Z5L7 613 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 HOOK3Q86VS8 718 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 FAM129AQ9BZQ8 928 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 CARD9Q9H257 536 aa11.84□□□□□ -0.51
CLSTN3-207ENST00000537408 MINDY4BA8MYZ0 360 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 POLR2DO15514 142 aaKnown RBP11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 CYP21A2P08686 494 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 XBP1P17861 261 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 KCNJ2P63252 427 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 PPARAQ07869 468 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 CCDC6Q16204 474 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 INF2Q27J81 1249 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 CENPTQ96BT3 561 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 PPP1R14BQ96C90 147 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 ELAC2Q9BQ52 826 aaKnown RBP11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 PDGFDQ9GZP0 370 aaPredicted RBP11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 TAB2Q9NYJ8 693 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 ITGB1BP2Q9UKP3 347 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 LRRC42Q9Y546 428 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 BZW2Q9Y6E2 419 aaKnown RBP11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 SLC4A7Q9Y6M7 1214 aa11.83□□□□□ -0.51
CLSTN3-207ENST00000537408 GOLGA8BA8MQT2 603 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ZNF24P17028 368 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 COPS2P61201 443 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 MAGOHP61326 146 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 BYSLQ13895 437 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 LONP2Q86WA8 852 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 FOXP4Q8IVH2 680 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 MAGOHBQ96A72 148 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 TCHPQ9BT92 498 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 COA1Q9GZY4 146 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 ANKRD26Q9UPS8 1709 aa11.83□□□□□ -0.52
CLSTN3-207ENST00000537408 USP17L3A6NCW0 530 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms