RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 TRPC6Q9Y210 931 aa15.15■□□□□ 0.02
CLSTN3-205ENST00000535452 PCDHA8Q9Y5H6 950 aa15.15■□□□□ 0.02
CLSTN3-205ENST00000535452 MYO9BQ13459 2157 aa15.15■□□□□ 0.02
CLSTN3-205ENST00000535452 LAMA2P24043 3122 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-205ENST00000535452 MYH7BA7E2Y1 1941 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 LINC01553A4QN01 128 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 MEIS2O14770 477 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 MARK3P27448 753 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 ADCY7P51828 1080 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 TRIM71Q2Q1W2 868 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 BMP2KLQ5H9B9 411 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 MCTP2Q6DN12 878 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 TMTC3Q6ZXV5 915 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 TMCO2Q7Z6W1 182 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 TRIM50Q86XT4 487 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 CMTR1Q8N1G2 835 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 FIBCD1Q8N539 461 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 LMBR1Q8WVP7 490 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 CTAGE1Q96RT6 745 aa15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 LSG1Q9H089 658 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-205ENST00000535452 TRIP12Q14669 1992 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 LCHNA4D1U4 455 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 GOLGA8AA7E2F4 631 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 GOLGA8BA8MQT2 603 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 CDC45O75419 566 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 IGBP1P78318 339 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 TFF2Q03403 129 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 GRIK4Q16099 956 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 ODR4Q5SWX8 454 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.13■□□□□ 0.011e-12■■■■□ 24.8
CLSTN3-205ENST00000535452 EP400NLQ6ZTU2 488 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 DHX32Q7L7V1 743 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 RAB11FIP4Q86YS3 637 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 PPP2R3CQ969Q6 453 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 IL17RAQ96F46 866 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 LRRC2Q9BYS8 371 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 SUGCTQ9HAC7 445 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 JADE2Q9NQC1 790 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 SLC9A2Q9UBY0 812 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 TAF6LQ9Y6J9 622 aa15.13■□□□□ 0.01
CLSTN3-205ENST00000535452 BACH1O14867 736 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 AP3B2Q13367 1082 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 UBE2SQ16763 222 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 SLC35G1Q2M3R5 365 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 PUS10Q3MIT2 529 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 FAM160B1Q5W0V3 765 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 SGMS1Q86VZ5 419 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 WNT8BQ93098 351 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 TOP1MTQ969P6 601 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 FTHL17Q9BXU8 183 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 A0A0C4DFX4 3053 aa15.12■□□□□ 0.01
CLSTN3-205ENST00000535452 hCG_1642624A0A1W2PR95 340 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 EPOPA6NHQ4 379 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 NCK2O43639 380 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 SLC26A2P50443 739 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 KCNQ1P51787 676 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 GPM6BQ13491 265 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 GPNMBQ14956 572 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 NECTIN1Q15223 517 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 UBIAD1Q9Y5Z9 338 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 UNC80Q8N2C7 3258 aa15.11■□□□□ 0.01
CLSTN3-205ENST00000535452 KLF18A0A0U1RQI7 1052 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 SMCO2A6NFE2 343 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 STAG3L1P0CL83 205 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 GHRP10912 638 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 BMP1P13497 986 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 KCNA2P16389 499 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 HOXC8P31273 242 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 CTNNB1P35222 781 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 METAP2P50579 478 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 STAT5BP51692 787 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 HTRA4P83105 476 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 SEMA3FQ13275 785 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 MBTPS1Q14703 1052 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 EPC2Q52LR7 807 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 FAM26DQ5JW98 314 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 KRT40Q6A162 431 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 TRAF7Q6Q0C0 670 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 APOA5Q6Q788 366 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 FAM43BQ6ZT52 329 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 RPAINQ86UA6 219 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 CKAP2LQ8IYA6 745 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 MRPL38Q96DV4 380 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 MXRA8Q9BRK3 442 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 C11orf84Q9BUA3 381 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 FAM49AQ9H0Q0 323 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 C6orf50Q9HD87 102 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 RIC8AQ9NPQ8 531 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 KCNH7Q9NS40 1196 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 LRFN2Q9ULH4 789 aa15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 V9GY48 417 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-205ENST00000535452 BAZ2BQ9UIF8 2168 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 RB1P06400 928 aa15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 ITGB5P18084 799 aa15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 COL9A1P20849 921 aa15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 GNA11P29992 359 aa15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 SSTR3P32745 418 aaPredicted RBP15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 RCAN1P53805 252 aa15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 PAK2Q13177 524 aa15.09■□□□□ 0.01
CLSTN3-205ENST00000535452 BTG3Q14201 252 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms