RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 UIMC1Q96RL1 719 aa22.55■■□□□ 1.2
CPSF1-209ENST00000532725 ZNF577Q9BSK1 485 aa22.55■■□□□ 1.2
CPSF1-209ENST00000532725 RANBP2P49792 3224 aaKnown RBP22.54■■□□□ 1.2
CPSF1-209ENST00000532725 MSH4O15457 936 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 RAG1P15918 1043 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 ACTR2P61160 394 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 GDF6Q6KF10 455 aaPredicted RBP22.54■■□□□ 1.2
CPSF1-209ENST00000532725 C7orf31Q8N865 590 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 FBXO18Q8NFZ0 1043 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 C8orf76Q96K31 380 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 LBHD1Q9BQE6 289 aaPredicted RBP22.54■■□□□ 1.2
CPSF1-209ENST00000532725 BRMS1Q9HCU9 246 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 TBC1D22BQ9NU19 505 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 GTF2IRD1Q9UHL9 959 aa22.54■■□□□ 1.2
CPSF1-209ENST00000532725 LGR5O75473 907 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 TDP2O95551 362 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 CCNE2O96020 404 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 TRIM50Q86XT4 487 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 DIS3L2Q8IYB7 885 aaKnown RBP22.53■■□□□ 1.2
CPSF1-209ENST00000532725 FAM184AQ8NB25 1140 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 CTAGE1Q96RT6 745 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 PCYT2Q99447 389 aa22.53■■□□□ 1.2
CPSF1-209ENST00000532725 FAM205CA6NFA0 338 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 CYP2C9P11712 490 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 GUCY1B3Q02153 619 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 HIC1Q14526 733 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 PTGISQ16647 500 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 PPP4R3AQ6IN85 833 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 ABHD15Q6UXT9 468 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 NEK8Q86SG6 692 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 SLC5A5Q92911 643 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 RNPEPQ9H4A4 650 aa22.52■■□□□ 1.2
CPSF1-209ENST00000532725 IGKV6D-21A0A0A0MT36 114 aa22.51■■□□□ 1.19
CPSF1-209ENST00000532725 DDX39AO00148 427 aaKnown RBP22.51■■□□□ 1.19
CPSF1-209ENST00000532725 LETM2Q2VYF4 491 aa22.51■■□□□ 1.19
CPSF1-209ENST00000532725 RIT2Q99578 217 aa22.51■■□□□ 1.19
CPSF1-209ENST00000532725 NOC4LQ9BVI4 516 aaKnown RBP22.51■■□□□ 1.19
CPSF1-209ENST00000532725 SMARCAD1Q9H4L7 1026 aa22.51■■□□□ 1.19
CPSF1-209ENST00000532725 ZNF215Q9UL58 517 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-209ENST00000532725 SMIM10L2AP0DMW4 78 aa22.5■■□□□ 1.19
CPSF1-209ENST00000532725 SMIM10L2BP0DMW5 78 aa22.5■■□□□ 1.19
CPSF1-209ENST00000532725 HOXC8P31273 242 aa22.5■■□□□ 1.19
CPSF1-209ENST00000532725 ZNF200P98182 395 aaPredicted RBP22.5■■□□□ 1.19
CPSF1-209ENST00000532725 MFSD5Q6N075 450 aa22.5■■□□□ 1.19
CPSF1-209ENST00000532725 HIPK3Q9H422 1215 aa22.5■■□□□ 1.19
CPSF1-209ENST00000532725 DDX25Q9UHL0 483 aaKnown RBP22.5■■□□□ 1.19
CPSF1-209ENST00000532725 SLC37A4O43826 429 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 CYP2C18P33260 490 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 CUL4AQ13619 759 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 SAFBQ15424 915 aaKnown RBP eCLIP22.49■■□□□ 1.19
CPSF1-209ENST00000532725 ZNF746Q6NUN9 644 aaPredicted RBP22.49■■□□□ 1.19
CPSF1-209ENST00000532725 PLPPR4Q7Z2D5 763 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 ETNPPLQ8TBG4 499 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 GLG1Q92896 1179 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 GJA10Q969M2 543 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 PPP1R12CQ9BZL4 782 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 UBE2OQ9C0C9 1292 aaKnown RBP22.49■■□□□ 1.19
CPSF1-209ENST00000532725 ERAP1Q9NZ08 941 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 UMODL1Q5DID0 1318 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 EMSYQ7Z589 1322 aa22.49■■□□□ 1.19
CPSF1-209ENST00000532725 PSMD10O75832 226 aa22.48■■□□□ 1.19
CPSF1-209ENST00000532725 GCFC2P16383 781 aaKnown RBP22.48■■□□□ 1.19
CPSF1-209ENST00000532725 STAT5BP51692 787 aa22.48■■□□□ 1.19
CPSF1-209ENST00000532725 KRT76Q01546 638 aa22.48■■□□□ 1.19
CPSF1-209ENST00000532725 NAP1L4Q99733 375 aaKnown RBP22.48■■□□□ 1.19
CPSF1-209ENST00000532725 FOXP1Q9H334 677 aaPredicted RBP22.48■■□□□ 1.19
CPSF1-209ENST00000532725 AZI2Q9H6S1 392 aa22.48■■□□□ 1.19
CPSF1-209ENST00000532725 NOD1Q9Y239 953 aa22.48■■□□□ 1.19
CPSF1-209ENST00000532725 TRIOBPQ9H2D6 2365 aa22.48■■□□□ 1.19
CPSF1-209ENST00000532725 C17orf102A2RUQ5 167 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 CCNT1O60563 726 aaKnown RBP22.47■■□□□ 1.19
CPSF1-209ENST00000532725 GJB2P29033 226 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 ADAM17P78536 824 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 LRCH2Q5VUJ6 765 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 MIS18BP1Q6P0N0 1132 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 SMAP1Q8IYB5 467 aaPredicted RBP22.47■■□□□ 1.19
CPSF1-209ENST00000532725 DHX38Q92620 1227 aaKnown RBP22.47■■□□□ 1.19
CPSF1-209ENST00000532725 KCNMB3Q9NPA1 279 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 SETD4Q9NVD3 440 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 PCDHA10Q9Y5I2 948 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 LTBP2Q14767 1821 aa22.47■■□□□ 1.19
CPSF1-209ENST00000532725 GAS7O60861 476 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 MARK3P27448 753 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 EPHB4P54760 987 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 FPGSQ05932 587 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 PTK7Q13308 1070 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 HABP4Q5JVS0 413 aaKnown RBP22.46■■□□□ 1.19
CPSF1-209ENST00000532725 SWSAP1Q6NVH7 229 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 B3GNT9Q6UX72 402 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 TMEM199Q8N511 208 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 AFAP1L1Q8TED9 768 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 FAM20AQ96MK3 541 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 WNT8AQ9H1J5 351 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 KIF3AQ9Y496 699 aa22.46■■□□□ 1.19
CPSF1-209ENST00000532725 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.46■■□□□ 1.19
CPSF1-209ENST00000532725 A0A1W2PPC1 479 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 PITPNM1O00562 1244 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 WNT7AO00755 349 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 TREHO43280 583 aa22.45■■□□□ 1.18
CPSF1-209ENST00000532725 CSF2RAP15509 400 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms