RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 NOSTRINQ8IVI9 506 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 C2orf69Q8N8R5 385 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 DDX1Q92499 740 aaKnown RBP5.48□□□□□ -1.53
CD44-233ENST00000531141 HSPBP1Q9NZL4 362 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 TELO2Q9Y4R8 837 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 A0A087X0B3 334 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 SLC12A8A0AV02 714 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 FAM83GA6ND36 823 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 HIP1RO75146 1068 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 KRT1P04264 644 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 MYCLP1P12525 358 aaPredicted RBP5.47□□□□□ -1.53
CD44-233ENST00000531141 PTPN1P18031 435 aaKnown RBP5.47□□□□□ -1.53
CD44-233ENST00000531141 MC3RP41968 323 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 STAT5AP42229 794 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 NKX3-2P78367 333 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 PAN2Q504Q3 1202 aaKnown RBP5.47□□□□□ -1.53
CD44-233ENST00000531141 TEPPQ6URK8 271 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 ATG14Q6ZNE5 492 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 OSTM1Q86WC4 334 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 KIF18BQ86Y91 864 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 THNSL2Q86YJ6 484 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 SMARCC2Q8TAQ2 1214 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 WNK4Q96J92 1243 aa5.47□□□□□ -1.53
CD44-233ENST00000531141 LTFP02788 710 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 ATF2P15336 505 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 FAHP16930 419 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 SOX5P35711 763 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 STAT3P40763 770 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 RAP1GAPP47736 663 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 NEK4P51957 841 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 IRF9Q00978 393 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 GRIN1Q05586 938 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 PKN3Q6P5Z2 889 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 CLEC4DQ8WXI8 215 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 B4GALT6Q9UBX8 382 aa5.46□□□□□ -1.54
CD44-233ENST00000531141 CNOT6Q9ULM6 557 aaKnown RBP5.46□□□□□ -1.54
CD44-233ENST00000531141 GAS7O60861 476 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 LRG1P02750 347 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 C8AP07357 584 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 VIL1P09327 827 aaKnown RBP5.45□□□□□ -1.54
CD44-233ENST00000531141 C1QTNF9P0C862 333 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 PI3P19957 117 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 LIMS1P48059 325 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 LINC00310P59036 64 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 SSPNQ14714 243 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 CR1LQ2VPA4 569 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 RNF187Q5TA31 235 aaPredicted RBP5.45□□□□□ -1.54
CD44-233ENST00000531141 BTBD8Q5XKL5 378 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 CD300LDQ6UXZ3 194 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 RNF180Q86T96 592 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 RBM12BQ8IXT5 1001 aaKnown RBP5.45□□□□□ -1.54
CD44-233ENST00000531141 CHAC2Q8WUX2 184 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 WRNIP1Q96S55 665 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 KCNH7Q9NS40 1196 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 RIC8BQ9NVN3 520 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 SMG5Q9UPR3 1016 aaKnown RBP5.45□□□□□ -1.54
CD44-233ENST00000531141 B3GALT1Q9Y5Z6 326 aa5.45□□□□□ -1.54
CD44-233ENST00000531141 PTPDC1A2A3K4 754 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 PRAMEF25A6NGN4 478 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 H7C1D1 291 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 TRAF5O00463 557 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 KCNK3O14649 394 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 MASP1P48740 699 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 HERVK_113P62684 666 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 FOXO4P98177 505 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 CAP1Q01518 475 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 DSG1Q02413 1049 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 KCNA10Q16322 511 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 CD276Q5ZPR3 534 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 VASNQ6EMK4 673 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 FSTL4Q6MZW2 842 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 CNKSR3Q6P9H4 555 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 FAM129CQ86XR2 697 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 TMEFF1Q8IYR6 380 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 FAM26EQ8N5C1 309 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 OR2W6PQ8NHA6 318 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 TMEM209Q96SK2 561 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 MTFR1LQ9H019 292 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 CAAP1Q9H8G2 361 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.44□□□□□ -1.54
CD44-233ENST00000531141 ZKSCAN5Q9Y2L8 839 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 KCTD3Q9Y597 815 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 PMF1-BGLAPU3KQ54 211 aa5.44□□□□□ -1.54
CD44-233ENST00000531141 FAM90A27PA6NNH2 459 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 NPIPB6E9PJ23 425 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 ACOT7O00154 380 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 SCDO00767 359 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 F2P00734 622 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 C4BPAP04003 597 aaKnown RBP5.43□□□□□ -1.54
CD44-233ENST00000531141 ITGA1P56199 1179 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 HTRA3P83110 453 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 DHCR24Q15392 516 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 SEPT7Q16181 437 aaKnown RBP5.43□□□□□ -1.54
CD44-233ENST00000531141 ZNF385BQ569K4 471 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 CPZQ66K79 652 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 KRT26Q7Z3Y9 468 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 DLG3Q92796 817 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 GORASP1Q9BQQ3 440 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 KRTAP4-2Q9BYR5 136 aa5.43□□□□□ -1.54
CD44-233ENST00000531141 PCIF1Q9H4Z3 704 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms