RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 ZNF561-AS1K7EIQ3 104 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 RASGRP1O95267 797 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 ATF2P15336 505 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 YBX3P16989 372 aaKnown RBP eCLIP6.93□□□□□ -1.3
CD44-231ENST00000531110 GJA4P35212 333 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 CRY1Q16526 586 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 HSP90AB4PQ58FF6 505 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 KCTD1Q719H9 257 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 FGD2Q7Z6J4 655 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 TMEM151BQ8IW70 566 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 TOX2Q96NM4 488 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 KCNJ15Q99712 375 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 ORAI3Q9BRQ5 295 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 TMX1Q9H3N1 280 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 CNOT6Q9ULM6 557 aaKnown RBP6.93□□□□□ -1.3
CD44-231ENST00000531110 SRPK3Q9UPE1 567 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 FAN1Q9Y2M0 1017 aa6.93□□□□□ -1.3
CD44-231ENST00000531110 NKRFO15226 690 aaKnown RBP eCLIP6.92□□□□□ -1.3
CD44-231ENST00000531110 DNAJC8O75937 253 aaPredicted RBP6.92□□□□□ -1.3
CD44-231ENST00000531110 CYP2C8P10632 490 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 KCNA6P17658 529 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 POU3F2P20265 443 aaPredicted RBP6.92□□□□□ -1.3
CD44-231ENST00000531110 FLT3P36888 993 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 IRX6P78412 446 aaPredicted RBP6.92□□□□□ -1.3
CD44-231ENST00000531110 HTRA3P83110 453 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 KRTAP19-4Q3LI73 84 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 SDE2Q6IQ49 451 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 HHIPL2Q6UWX4 724 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.92□□□□□ -1.3
CD44-231ENST00000531110 FAM129CQ86XR2 697 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 TMEFF1Q8IYR6 380 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 TOE1Q96GM8 510 aaKnown RBP6.92□□□□□ -1.3
CD44-231ENST00000531110 PRDM16Q9HAZ2 1276 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 CATSPERZQ9NTU4 200 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 RBM28Q9NW13 759 aaKnown RBP6.92□□□□□ -1.3
CD44-231ENST00000531110 RAI14Q9P0K7 980 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 PLA2G2DQ9UNK4 145 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 KCTD3Q9Y597 815 aa6.92□□□□□ -1.3
CD44-231ENST00000531110 C8BP07358 591 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 PYGMP11217 842 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 PDE6AP16499 860 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 NKX3-2P78367 333 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 FOXO4P98177 505 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 ZCCHC8Q6NZY4 707 aaKnown RBP6.91□□□□□ -1.3
CD44-231ENST00000531110 DDX53Q86TM3 631 aaKnown RBP6.91□□□□□ -1.3
CD44-231ENST00000531110 EGFL6Q8IUX8 553 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 LINC00482Q8N8I6 264 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 ARRDC4Q8NCT1 418 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 YIPF4Q9BSR8 244 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 ISY1Q9ULR0 285 aaKnown RBP6.91□□□□□ -1.3
CD44-231ENST00000531110 CBLCQ9ULV8 474 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 CD2APQ9Y5K6 639 aa6.91□□□□□ -1.3
CD44-231ENST00000531110 TCRBV5S4A2TA0A5A2 114 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 NPIPB6E9PJ23 425 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 SLC27A2O14975 620 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 CLASP2O75122 1294 aaKnown RBP6.9□□□□□ -1.3
CD44-231ENST00000531110 AMY2AP04746 511 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 COL6A2P12110 1019 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 AMY2BP19961 511 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 NCKAP1LP55160 1127 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 TUSC3Q13454 348 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 SSPNQ14714 243 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 ARHGAP44Q17R89 818 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 CR1LQ2VPA4 569 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 TKFCQ3LXA3 575 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 CIAPIN1Q6FI81 312 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 ARHGAP36Q6ZRI8 547 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 FAM43BQ6ZT52 329 aaPredicted RBP6.9□□□□□ -1.3
CD44-231ENST00000531110 OVCH1Q7RTY7 1134 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 SMARCC2Q8TAQ2 1214 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 SH3RF2Q8TEC5 729 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 DACT3Q96B18 629 aaPredicted RBP6.9□□□□□ -1.3
CD44-231ENST00000531110 DDX11Q96FC9 970 aa6.9□□□□□ -1.3
CD44-231ENST00000531110 EPB41L4AQ9HCS5 686 aaPredicted RBP6.9□□□□□ -1.3
CD44-231ENST00000531110 SCRIBQ14160 1630 aa6.9□□□□□ -1.31
CD44-231ENST00000531110 PLEKHD1A6NEE1 506 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 SRGAP2CP0DJJ0 459 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 PI3P19957 117 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 CALRP27797 417 aaKnown RBP6.89□□□□□ -1.31
CD44-231ENST00000531110 SSR1P43307 286 aaKnown RBP6.89□□□□□ -1.31
CD44-231ENST00000531110 ZNF124Q15973 351 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 TMEM177Q53S58 311 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 DALRD3Q5D0E6 543 aaKnown RBP6.89□□□□□ -1.31
CD44-231ENST00000531110 CNKSR3Q6P9H4 555 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 ABHD17CQ6PCB6 329 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 TEPPQ6URK8 271 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 OTOP1Q7RTM1 612 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 KIF18BQ86Y91 864 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 NIM1KQ8IY84 436 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 OTUD6BQ8N6M0 293 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 CLEC4DQ8WXI8 215 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 MFSD3Q96ES6 412 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 WRNIP1Q96S55 665 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 KRTAP4-12Q9BQ66 201 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 BCAS3Q9H6U6 928 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 SMURF1Q9HCE7 757 aa6.89□□□□□ -1.31
CD44-231ENST00000531110 MAN2B1O00754 1011 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 OPA1O60313 960 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 LRG1P02750 347 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 FAHP16930 419 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms