RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TRAF5O00463 557 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 POU3F2P20265 443 aaPredicted RBP6.79□□□□□ -1.32
CD44-230ENST00000528922 IGFBP6P24592 240 aaPredicted RBP6.79□□□□□ -1.32
CD44-230ENST00000528922 MASP1P48740 699 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 MECP2P51608 486 aaKnown RBP6.79□□□□□ -1.32
CD44-230ENST00000528922 EPHA5P54756 1037 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 GRIN1Q05586 938 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 PCBP1Q15365 356 aaKnown RBP eCLIP6.79□□□□□ -1.32
CD44-230ENST00000528922 FSTL4Q6MZW2 842 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 UBE2R2Q712K3 238 aaPredicted RBP6.79□□□□□ -1.32
CD44-230ENST00000528922 KCTD1Q719H9 257 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 FAM126BQ8IXS8 530 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 FAM26EQ8N5C1 309 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 WNK4Q96J92 1243 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 PDGFDQ9GZP0 370 aaPredicted RBP6.79□□□□□ -1.32
CD44-230ENST00000528922 SRPK3Q9UPE1 567 aa6.79□□□□□ -1.32
CD44-230ENST00000528922 KPNA6O60684 536 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 TMEM253P0C7T8 217 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 C1QTNF9P0C862 333 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 MED14OSP0DP75 135 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 NCAM1P13591 858 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 GLDCP23378 1020 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 FLT3P36888 993 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 STAT5AP42229 794 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 NEK4P51957 841 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 TARBP2Q15633 366 aaKnown RBP6.78□□□□□ -1.32
CD44-230ENST00000528922 HHIPL2Q6UWX4 724 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 ETV3LQ6ZN32 361 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.78□□□□□ -1.32
CD44-230ENST00000528922 PANK1Q8TE04 598 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 CPA5Q8WXQ8 436 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 SYT3Q9BQG1 590 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 RNF38Q9H0F5 515 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 ADGRL1O94910 1474 aa6.78□□□□□ -1.32
CD44-230ENST00000528922 FAM90A27PA6NNH2 459 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 ACOT7O00154 380 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 CBX4O00257 560 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 BUB1BO60566 1050 aaPredicted RBP6.77□□□□□ -1.32
CD44-230ENST00000528922 PDE8AO60658 829 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 LRG1P02750 347 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 C8BP07358 591 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 CACNB2Q08289 660 aaPredicted RBP6.77□□□□□ -1.32
CD44-230ENST00000528922 SEC23AQ15436 765 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 CR1LQ2VPA4 569 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 ATG14Q6ZNE5 492 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 THNSL2Q86YJ6 484 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 TRIM48Q8IWZ4 208 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 TMEFF1Q8IYR6 380 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 C2orf69Q8N8R5 385 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.77□□□□□ -1.32
CD44-230ENST00000528922 NUB1Q9Y5A7 615 aa6.77□□□□□ -1.32
CD44-230ENST00000528922 KRTAP9-6A0A140TA67 174 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SKOR2Q2VWA4 1001 aaPredicted RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 TAF7LQ5H9L4 462 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 FIGNQ5HY92 759 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 CD300LDQ6UXZ3 194 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 OTOP1Q7RTM1 612 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 B3GNT8Q7Z7M8 397 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 NOSTRINQ8IVI9 506 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 NLGN4XQ8N0W4 816 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 FAM177A1Q8N128 213 aaPredicted RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 CHST14Q8NCH0 376 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 TTLL11Q8NHH1 800 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 TOE1Q96GM8 510 aaKnown RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 ORAI3Q9BRQ5 295 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 EPB41L4AQ9HCS5 686 aaPredicted RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 DTLQ9NZJ0 730 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SMG5Q9UPR3 1016 aaKnown RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 ATP23Q9Y6H3 246 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 PRDM2Q13029 1718 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 ZBTB48P10074 688 aaPredicted RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 YBX3P16989 372 aaKnown RBP eCLIP6.76□□□□□ -1.33
CD44-230ENST00000528922 PFKLP17858 780 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 LIMS1P48059 325 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SSPNQ14714 243 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 ZNF124Q15973 351 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SEPT7Q16181 437 aaKnown RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 PAN2Q504Q3 1202 aaKnown RBP6.76□□□□□ -1.33
CD44-230ENST00000528922 BTBD8Q5XKL5 378 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 CPZQ66K79 652 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 PKN3Q6P5Z2 889 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 TEPPQ6URK8 271 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 ANKLE2Q86XL3 938 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SMARCC2Q8TAQ2 1214 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SIGLEC10Q96LC7 697 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SLC38A3Q99624 504 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 YIPF4Q9BSR8 244 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 RBPJLQ9UBG7 517 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 B4GALT6Q9UBX8 382 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 WASF3Q9UPY6 502 aa6.76□□□□□ -1.33
CD44-230ENST00000528922 SYNJ1O43426 1573 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 SLC12A8A0AV02 714 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 PTPDC1A2A3K4 754 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 NFIBO00712 420 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 CLASP2O75122 1294 aaKnown RBP6.75□□□□□ -1.33
CD44-230ENST00000528922 TSPAN15O95858 294 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 FAHP16930 419 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 PTPN1P18031 435 aaKnown RBP6.75□□□□□ -1.33
CD44-230ENST00000528922 FOXO4P98177 505 aa6.75□□□□□ -1.33
CD44-230ENST00000528922 EP400NLQ6ZTU2 488 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms