RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ZNF654Q8IZM8 581 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 APBB2Q92870 758 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 MYL10Q9BUA6 226 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 LY9Q9HBG7 655 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 SUPT16HQ9Y5B9 1047 aaKnown RBP27.17■■□□□ 1.94
CPSF1-202ENST00000527827 MYO7AQ13402 2215 aa27.17■■□□□ 1.94
CPSF1-202ENST00000527827 ATG2AQ2TAZ0 1938 aa27.16■■□□□ 1.94
CPSF1-202ENST00000527827 NEK9Q8TD19 979 aa27.16■■□□□ 1.94
CPSF1-202ENST00000527827 CUL5Q93034 780 aa27.16■■□□□ 1.94
CPSF1-202ENST00000527827 RRP36Q96EU6 259 aaKnown RBP27.16■■□□□ 1.94
CPSF1-202ENST00000527827 IFIH1Q9BYX4 1025 aaKnown RBP27.16■■□□□ 1.94
CPSF1-202ENST00000527827 ARIH1Q9Y4X5 557 aaPredicted RBP27.16■■□□□ 1.94
CPSF1-202ENST00000527827 NRCAMQ92823 1304 aa27.16■■□□□ 1.94
CPSF1-202ENST00000527827 FAM86C2PA6NEL3 165 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 CHRNA1P02708 482 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 SMARCA1P28370 1054 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 TIGD5Q53EQ6 642 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 PTCRAQ6ISU1 281 aaPredicted RBP27.15■■□□□ 1.94
CPSF1-202ENST00000527827 GJD3Q8N144 294 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 BANK1Q8NDB2 785 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 MAP4K1Q92918 833 aa27.15■■□□□ 1.94
CPSF1-202ENST00000527827 GRXCR2A6NFK2 248 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 ATP9AO75110 1047 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 DDAH1O94760 285 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 RUFY4Q6ZNE9 571 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 RPAINQ86UA6 219 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 NLRX1Q86UT6 975 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 CTCFLQ8NI51 663 aaPredicted RBP27.14■■□□□ 1.94
CPSF1-202ENST00000527827 HCN4Q9Y3Q4 1203 aa27.14■■□□□ 1.94
CPSF1-202ENST00000527827 PLEKHA8P1O95397 391 aa27.13■■□□□ 1.93
CPSF1-202ENST00000527827 KCNA2P16389 499 aa27.13■■□□□ 1.93
CPSF1-202ENST00000527827 KIF5BP33176 963 aa27.13■■□□□ 1.93
CPSF1-202ENST00000527827 TCF7P36402 384 aaPredicted RBP27.13■■□□□ 1.93
CPSF1-202ENST00000527827 TCEAL5Q5H9L2 206 aa27.13■■□□□ 1.93
CPSF1-202ENST00000527827 GIMAP8Q8ND71 665 aaPredicted RBP27.13■■□□□ 1.93
CPSF1-202ENST00000527827 EHMT1Q9H9B1 1298 aa27.13■■□□□ 1.93
CPSF1-202ENST00000527827 RBM8AQ9Y5S9 174 aaKnown RBP27.13■■□□□ 1.93
CPSF1-202ENST00000527827 H3BQ06 376 aaPredicted RBP27.12■■□□□ 1.93
CPSF1-202ENST00000527827 LINC00271P0C7V0 271 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 GHRP10912 638 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 MGAT3Q09327 533 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 COL19A1Q14993 1142 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 SRBD1Q8N5C6 995 aaKnown RBP27.12■■□□□ 1.93
CPSF1-202ENST00000527827 GPRASP2Q96D09 838 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 IL17RAQ96F46 866 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 LZTS2Q9BRK4 669 aa27.12■■□□□ 1.93
CPSF1-202ENST00000527827 SEC63Q9UGP8 760 aaKnown RBP27.12■■□□□ 1.93
CPSF1-202ENST00000527827 GSTTP1A0A1W2PQM5 241 aa27.11■■□□□ 1.93
CPSF1-202ENST00000527827 ITGB5P18084 799 aa27.11■■□□□ 1.93
CPSF1-202ENST00000527827 PUS10Q3MIT2 529 aaKnown RBP27.11■■□□□ 1.93
CPSF1-202ENST00000527827 PABPC5Q96DU9 382 aaKnown RBP27.11■■□□□ 1.93
CPSF1-202ENST00000527827 PRC1O43663 620 aa27.1■■□□□ 1.93
CPSF1-202ENST00000527827 HOXD11P31277 338 aaPredicted RBP27.1■■□□□ 1.93
CPSF1-202ENST00000527827 PPFIA1Q13136 1202 aa27.1■■□□□ 1.93
CPSF1-202ENST00000527827 COL9A3Q14050 684 aaPredicted RBP27.1■■□□□ 1.93
CPSF1-202ENST00000527827 LPIN1Q14693 890 aa27.1■■□□□ 1.93
CPSF1-202ENST00000527827 TAF2Q6P1X5 1199 aa27.1■■□□□ 1.93
CPSF1-202ENST00000527827 MTA3Q9BTC8 594 aa27.1■■□□□ 1.93
CPSF1-202ENST00000527827 NSUN3Q9H649 340 aaKnown RBP27.1■■□□□ 1.93
CPSF1-202ENST00000527827 TTC3P53804 2025 aa27.1■■□□□ 1.93
CPSF1-202ENST00000527827 C5orf67F2Z3F1 127 aa27.09■■□□□ 1.93
CPSF1-202ENST00000527827 CMTR1Q8N1G2 835 aaKnown RBP27.09■■□□□ 1.93
CPSF1-202ENST00000527827 FIBCD1Q8N539 461 aa27.09■■□□□ 1.93
CPSF1-202ENST00000527827 SEPT1Q8WYJ6 367 aa27.09■■□□□ 1.93
CPSF1-202ENST00000527827 PSTPIP2Q9H939 334 aa27.09■■□□□ 1.93
CPSF1-202ENST00000527827 RC3H2Q9HBD1 1191 aaKnown RBP27.09■■□□□ 1.93
CPSF1-202ENST00000527827 UBIAD1Q9Y5Z9 338 aa27.09■■□□□ 1.93
CPSF1-202ENST00000527827 MBLAC1A4D2B0 266 aaPredicted RBP27.08■■□□□ 1.93
CPSF1-202ENST00000527827 SH2B2O14492 632 aaPredicted RBP27.08■■□□□ 1.93
CPSF1-202ENST00000527827 MARK3P27448 753 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 SSTR3P32745 418 aaPredicted RBP27.08■■□□□ 1.93
CPSF1-202ENST00000527827 CTNNB1P35222 781 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 GNAQP50148 359 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 GRIK4Q16099 956 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 MARCH8Q5T0T0 291 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 CASC1Q6TDU7 716 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 CDHR1Q96JP9 859 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 ERAP1Q9NZ08 941 aa27.08■■□□□ 1.93
CPSF1-202ENST00000527827 ENPP3O14638 875 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 RXRAP19793 462 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 BMPR1AP36894 532 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 UBE2SQ16763 222 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 DNAJB3Q8WWF6 145 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 PKD2L1Q9P0L9 805 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 TUBE1Q9UJT0 475 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 ADGRA3Q8IWK6 1321 aa27.07■■□□□ 1.92
CPSF1-202ENST00000527827 RB1P06400 928 aa27.06■■□□□ 1.92
CPSF1-202ENST00000527827 FBXO47Q5MNV8 452 aa27.06■■□□□ 1.92
CPSF1-202ENST00000527827 NFXL1Q6ZNB6 911 aa27.06■■□□□ 1.92
CPSF1-202ENST00000527827 EP400NLQ6ZTU2 488 aa27.06■■□□□ 1.92
CPSF1-202ENST00000527827 RSPH3Q86UC2 560 aa27.06■■□□□ 1.92
CPSF1-202ENST00000527827 TMTC2Q8N394 836 aa27.06■■□□□ 1.92
CPSF1-202ENST00000527827 hCG_1642624A0A1W2PR95 340 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 CCDC69A6NI79 296 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 GRM6O15303 877 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 MCM5P33992 734 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 LTBRP36941 435 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 MTMR1Q13613 665 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 GLG1Q92896 1179 aa27.05■■□□□ 1.92
CPSF1-202ENST00000527827 CLP1Q92989 425 aaKnown RBP27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms