RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MS4A5Q9H3V2 200 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 SP110Q9HB58 689 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 TCF7L1Q9HCS4 588 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 ACSS2Q9NR19 701 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 BICRAQ9NZM4 1560 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 IMPACTQ9P2X3 320 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 FBLN5Q9UBX5 448 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 B3GALT1Q9Y5Z6 326 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 ATP23Q9Y6H3 246 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 TAF6LQ9Y6J9 622 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 GOLGA8AA7E2F4 631 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 GOLGA8BA8MQT2 603 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 KRT18P05783 430 aaKnown RBP9.68□□□□□ -0.86
LSM1-202ENST00000520286 KRT85P78386 507 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 LRRC32Q14392 662 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 HLTFQ14527 1009 aaKnown RBP eCLIP9.68□□□□□ -0.86
LSM1-202ENST00000520286 GFOD2Q3B7J2 385 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 RALGPS1Q5JS13 557 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 CXorf57Q6NSI4 855 aaKnown RBP9.68□□□□□ -0.86
LSM1-202ENST00000520286 CPA6Q8N4T0 437 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 ANKS4BQ8N8V4 417 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 DLG3Q92796 817 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 ZDHHC5Q9C0B5 715 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 ANKRD6Q9Y2G4 727 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 MRFAP1Q9Y605 127 aa9.68□□□□□ -0.86
LSM1-202ENST00000520286 CYP17A1P05093 508 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 PF4V1P10720 104 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 TACR1P25103 407 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 PTX3P26022 381 aaPredicted RBP9.67□□□□□ -0.86
LSM1-202ENST00000520286 ZP2Q05996 745 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 KCNMA1Q12791 1236 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 TCIRG1Q13488 830 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 SLC14A2Q15849 920 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 NKAPLQ5M9Q1 402 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 TMEM240Q5SV17 173 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 STEAP3Q658P3 488 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 CC2D1AQ6P1N0 951 aaPredicted RBP9.67□□□□□ -0.86
LSM1-202ENST00000520286 GALNT18Q6P9A2 607 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 TPH2Q8IWU9 490 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 ALPK1Q96QP1 1244 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 ZMAT4Q9H898 229 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 PDLIM7Q9NR12 457 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 KCNH7Q9NS40 1196 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 NUB1Q9Y5A7 615 aa9.67□□□□□ -0.86
LSM1-202ENST00000520286 TPD52L2O43399 206 aaKnown RBP9.66□□□□□ -0.86
LSM1-202ENST00000520286 MAFKO60675 156 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 TGFB1P01137 390 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 NTRK1P04629 796 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 MSL3P1P0C860 447 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 U2AF1L5P0DN76 240 aaPredicted RBP9.66□□□□□ -0.86
LSM1-202ENST00000520286 U2AF1Q01081 240 aaKnown RBP eCLIP9.66□□□□□ -0.86
LSM1-202ENST00000520286 MVKQ03426 396 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 TMEM132BQ14DG7 1078 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 SEC23AQ15436 765 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 CHRNA2Q15822 529 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 MSMPQ1L6U9 139 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 RSPO4Q2I0M5 234 aaPredicted RBP9.66□□□□□ -0.86
LSM1-202ENST00000520286 FRMD7Q6ZUT3 714 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 KCTD1Q719H9 257 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 AMOTL1Q8IY63 956 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 ZZZ3Q8IYH5 903 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 STK11IPQ8N1F8 1099 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 LMBR1Q8WVP7 490 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 TMEM59LQ9UK28 342 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 PNMA8BQ9ULN7 279 aaPredicted RBP9.66□□□□□ -0.86
LSM1-202ENST00000520286 GIT1Q9Y2X7 761 aa9.66□□□□□ -0.86
LSM1-202ENST00000520286 TRIM75PA6NK02 468 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 SLC27A2O14975 620 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA12O60330 932 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 KDM1AO60341 852 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 H2AFYO75367 372 aaKnown RBP9.65□□□□□ -0.86
LSM1-202ENST00000520286 CD40P25942 277 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 GPR3P46089 330 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 ODF1Q14990 250 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 EMC4Q5J8M3 183 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 CYP4F22Q6NT55 531 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 ESRP1Q6NXG1 681 aaKnown RBP9.65□□□□□ -0.86
LSM1-202ENST00000520286 NUP43Q8NFH3 380 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 BCL7CQ8WUZ0 217 aaPredicted RBP9.65□□□□□ -0.86
LSM1-202ENST00000520286 BSDC1Q9NW68 430 aaPredicted RBP9.65□□□□□ -0.86
LSM1-202ENST00000520286 ACSL6Q9UKU0 697 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA9Q9Y5G4 932 aaKnown RBP9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA8Q9Y5G5 932 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA7Q9Y5G6 932 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA6Q9Y5G7 932 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA3Q9Y5H0 932 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 PCDHGA2Q9Y5H1 932 aa9.65□□□□□ -0.86
LSM1-202ENST00000520286 LCHNA4D1U4 455 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 HGSO14964 777 aaPredicted RBP9.64□□□□□ -0.87
LSM1-202ENST00000520286 XPOTO43592 962 aaKnown RBP9.64□□□□□ -0.87
LSM1-202ENST00000520286 DYRK3O43781 588 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 NRDCO43847 1150 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 PLIN1O60240 522 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 PRKCAP17252 672 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 GSK3AP49840 483 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 RHBDL3P58872 404 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 CHRNEQ04844 493 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 PDCD1Q15116 288 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 RBM12BQ8IXT5 1001 aaKnown RBP9.64□□□□□ -0.87
LSM1-202ENST00000520286 PMM1Q92871 262 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 257.6 ms