RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ZHX2Q9Y6X8 837 aa3.29□□□□□ -1.88
MCF2-208ENST00000519895 ERICH2A1L162 156 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 F8W031 263 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 VWA5AO00534 786 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 PRPF3O43395 683 aaKnown RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 DHX16O60231 1041 aaKnown RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 CDKL5O76039 1030 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 PARNO95453 639 aaKnown RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 CYP3A4P08684 503 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 PDHBP11177 359 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 EEF2P13639 858 aaKnown RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 STAT2P52630 851 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 SYDE2Q5VT97 1194 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 ZNF589Q86UQ0 364 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 GIMAP8Q8ND71 665 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 RDM1Q8NG50 284 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 SNX21Q969T3 373 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 RNF26Q9BY78 433 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 EPC1Q9H2F5 836 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 RBPJLQ9UBG7 517 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 IQSEC3Q9UPP2 1182 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 ZNFX1Q9P2E3 1918 aaKnown RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 C5orf42Q9H799 3197 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 KIAA1217Q5T5P2 1943 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 PNMA6FA0A0J9YX94 578 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 TRIM6-TRIM34B2RNG4 842 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 F5H6K3 240 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 PRKAB2O43741 272 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 NDUFB10O96000 172 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 TIMP1P01033 207 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 CYP21A2P08686 494 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 TGFB3P10600 412 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 KCNA5P22460 613 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 RPS6KB1P23443 525 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 RFC5P40937 340 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 IRX3P78415 501 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 TFAP4Q01664 338 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 KLRC3Q07444 240 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 TROAPQ12815 778 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 RABEP1Q15276 862 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 SLFN13Q68D06 897 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 TBC1D10CQ8IV04 446 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 ZSCAN29Q8IWY8 852 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 MIGA1Q8NAN2 632 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 FAM227BQ96M60 508 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 MBOAT7Q96N66 472 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 NEK1Q96PY6 1258 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 SENP7Q9BQF6 1050 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 TMEM47Q9BQJ4 181 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 SPATC1LQ9H0A9 340 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 LY9Q9HBG7 655 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 ADD3Q9UEY8 706 aaKnown RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 ZNF214Q9UL59 606 aaPredicted RBP3.28□□□□□ -1.88
MCF2-208ENST00000519895 NFASCO94856 1347 aa3.28□□□□□ -1.88
MCF2-208ENST00000519895 MBTPS2O43462 519 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ELNP15502 786 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 IFNAR1P17181 557 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 AOC1P19801 751 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CLCN1P35523 988 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ABL2P42684 1182 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 SPP2Q13103 211 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 NOLC1Q14978 699 aaKnown RBP eCLIP3.27□□□□□ -1.89
MCF2-208ENST00000519895 SEPT2Q15019 361 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 DCAF6Q58WW2 860 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 RUFY3Q7L099 469 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CATIPQ7Z7H3 387 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 RALYLQ86SE5 291 aaKnown RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 RPAINQ86UA6 219 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 FAM133AQ8N9E0 248 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 BICD2Q8TD16 824 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 SDR42E1Q8WUS8 393 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CEP95Q96GE4 821 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CDHR1Q96JP9 859 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CLMNQ96JQ2 1002 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 SPATA32Q96LK8 384 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 NUDT12Q9BQG2 462 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 RPAP3Q9H6T3 665 aaPredicted RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 ACAD9Q9H845 621 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 KAT14Q9H8E8 782 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 A0A1W2PRG0 241 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 TSPY2A6NKD2 308 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 STXBP3O00186 592 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ZBTB5O15062 677 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 PFKFB2O60825 505 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 LUC7L3O95232 432 aaKnown RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 ATG7O95352 703 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 PARP1P09874 1014 aaKnown RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 SMPD1P17405 629 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CIITAP33076 1130 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 FUT2Q10981 343 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 PICALMQ13492 652 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 WTAPQ15007 396 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 MYSM1Q5VVJ2 828 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 MFSD14CQ5VZR4 134 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 IQSEC1Q6DN90 963 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 TMTC3Q6ZXV5 915 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ENAHQ8N8S7 591 aaPredicted RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 SLC43A3Q8NBI5 491 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CCDC148Q8NFR7 591 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CMASQ8NFW8 434 aaPredicted RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms