RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 GNA11P29992 359 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 ADAM17P78536 824 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 SP4Q02446 784 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 CYP2W1Q8TAV3 490 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 PHOSPHO2Q8TCD6 241 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 SLC9A7Q96T83 725 aa33.89■■■■□ 3.02
SYNPO-203ENST00000518872 UPF3BQ9BZI7 483 aaKnown RBP33.89■■■■□ 3.02
SYNPO-203ENST00000518872 FTOQ9C0B1 505 aaKnown RBP eCLIP33.89■■■■□ 3.02
SYNPO-203ENST00000518872 CAND2O75155 1236 aa33.88■■■■□ 3.01
SYNPO-203ENST00000518872 CYP3A4P08684 503 aa33.88■■■■□ 3.01
SYNPO-203ENST00000518872 ANAPC15P60006 121 aa33.88■■■■□ 3.01
SYNPO-203ENST00000518872 ARHGAP4P98171 946 aa33.88■■■■□ 3.01
SYNPO-203ENST00000518872 UTP14CQ5TAP6 766 aaKnown RBP33.88■■■■□ 3.01
SYNPO-203ENST00000518872 CCDC148Q8NFR7 591 aa33.88■■■■□ 3.01
SYNPO-203ENST00000518872 NCOA5Q9HCD5 579 aaKnown RBP33.88■■■■□ 3.01
SYNPO-203ENST00000518872 JPH1Q9HDC5 661 aaPredicted RBP33.88■■■■□ 3.01
SYNPO-203ENST00000518872 CHD9Q3L8U1 2897 aa33.88■■■■□ 3.01
SYNPO-203ENST00000518872 EMSYQ7Z589 1322 aa33.87■■■■□ 3.01
SYNPO-203ENST00000518872 NBNO60934 754 aa33.87■■■■□ 3.01
SYNPO-203ENST00000518872 ATP2A2P16615 1042 aaKnown RBP33.87■■■■□ 3.01
SYNPO-203ENST00000518872 CCT2P78371 535 aaKnown RBP33.87■■■■□ 3.01
SYNPO-203ENST00000518872 ZNF618Q5T7W0 954 aa33.87■■■■□ 3.01
SYNPO-203ENST00000518872 REXO1Q8N1G1 1221 aaKnown RBP33.87■■■■□ 3.01
SYNPO-203ENST00000518872 SH3GLB2Q9NR46 395 aa33.87■■■■□ 3.01
SYNPO-203ENST00000518872 SLC9A2Q9UBY0 812 aa33.87■■■■□ 3.01
SYNPO-203ENST00000518872 PCDHA11Q9Y5I1 949 aa33.87■■■■□ 3.01
SYNPO-203ENST00000518872 NRCAMQ92823 1304 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 TREHO43280 583 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 JAKMIP3Q5VZ66 844 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 BICD2Q8TD16 824 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 SLC26A6Q9BXS9 759 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 ERAP1Q9NZ08 941 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 PTPRSQ13332 1948 aa33.86■■■■□ 3.01
SYNPO-203ENST00000518872 EIF5BO60841 1220 aaKnown RBP33.85■■■■□ 3.01
SYNPO-203ENST00000518872 LGR5O75473 907 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 ARP10275 920 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 GRIN2CQ14957 1233 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 CNKSR3Q6P9H4 555 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 IL17RAQ96F46 866 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 SDF4Q9BRK5 362 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 SMARCAD1Q9H4L7 1026 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 AGO4Q9HCK5 861 aaKnown RBP33.85■■■■□ 3.01
SYNPO-203ENST00000518872 PDRG1Q9NUG6 133 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 PKD2L1Q9P0L9 805 aa33.85■■■■□ 3.01
SYNPO-203ENST00000518872 YBX2Q9Y2T7 364 aaKnown RBP33.85■■■■□ 3.01
SYNPO-203ENST00000518872 TRIM22Q8IYM9 498 aa33.84■■■■□ 3.01
SYNPO-203ENST00000518872 LMBR1Q8WVP7 490 aa33.84■■■■□ 3.01
SYNPO-203ENST00000518872 MYLIPQ8WY64 445 aa33.84■■■■□ 3.01
SYNPO-203ENST00000518872 SETD4Q9NVD3 440 aa33.84■■■■□ 3.01
SYNPO-203ENST00000518872 MBTPS1Q14703 1052 aa33.83■■■■□ 3.01
SYNPO-203ENST00000518872 FAM177A1Q8N128 213 aaPredicted RBP33.83■■■■□ 3.01
SYNPO-203ENST00000518872 IGLV3-22A0A075B6J6 115 aa33.82■■■■□ 3
SYNPO-203ENST00000518872 THPOP40225 353 aa33.82■■■■□ 3
SYNPO-203ENST00000518872 ITGB3BPQ13352 177 aaPredicted RBP33.82■■■■□ 3
SYNPO-203ENST00000518872 SLC28A3Q9HAS3 691 aa33.82■■■■□ 3
SYNPO-203ENST00000518872 MICAL3Q7RTP6 2002 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 RSPH10B2B2RC85 870 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 FAM86B1E9PN63 330 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 ADAMTS3O15072 1205 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 EFCAB14O75071 495 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 FAM86B2P0C5J1 330 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 RSPH10BP0C881 870 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 ZNF76P36508 570 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 RPAINQ86UA6 219 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 PCYT2Q99447 389 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 NKX2-4Q9H2Z4 354 aa33.81■■■■□ 3
SYNPO-203ENST00000518872 ABHD14A-ACY1A0A1B0GW23 586 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 CPLX1O14810 134 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 ATG7O95352 703 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 DEXIO95424 95 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 CIITAP33076 1130 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 RABGGTBP53611 331 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 ACTR2P61160 394 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 SSRP1Q08945 709 aaKnown RBP33.8■■■■□ 3
SYNPO-203ENST00000518872 CPLX2Q6PUV4 134 aaKnown RBP33.8■■■■□ 3
SYNPO-203ENST00000518872 GLG1Q92896 1179 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 VPS54Q9P1Q0 977 aa33.8■■■■□ 3
SYNPO-203ENST00000518872 FOSL2P15408 326 aa33.79■■■■□ 3
SYNPO-203ENST00000518872 WDR5P61964 334 aaKnown RBP33.79■■■■□ 3
SYNPO-203ENST00000518872 SETQ01105 290 aaPredicted RBP33.79■■■■□ 3
SYNPO-203ENST00000518872 TAF2Q6P1X5 1199 aa33.79■■■■□ 3
SYNPO-203ENST00000518872 PLA2G4DQ86XP0 818 aa33.79■■■■□ 3
SYNPO-203ENST00000518872 CHD7Q9P2D1 2997 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 MBLAC1A4D2B0 266 aaPredicted RBP33.78■■■■□ 3
SYNPO-203ENST00000518872 PPFIA3O75145 1194 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 KCNJ6P48051 423 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 PPFIA1Q13136 1202 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 FAM26DQ5JW98 314 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 PLPPR4Q7Z2D5 763 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 HERC6Q8IVU3 1022 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 SLC17A8Q8NDX2 589 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 AZI2Q9H6S1 392 aa33.78■■■■□ 3
SYNPO-203ENST00000518872 TNPO1Q92973 898 aaKnown RBP33.77■■■■□ 3
SYNPO-203ENST00000518872 IGKV6D-21A0A0A0MT36 114 aa33.76■■■□□ 2.99
SYNPO-203ENST00000518872 DHX15O43143 795 aaKnown RBP33.76■■■□□ 2.99
SYNPO-203ENST00000518872 SLC26A2P50443 739 aa33.76■■■□□ 2.99
SYNPO-203ENST00000518872 MKRN4PQ13434 485 aaPredicted RBP33.76■■■□□ 2.99
SYNPO-203ENST00000518872 IKBKEQ14164 716 aa33.76■■■□□ 2.99
SYNPO-203ENST00000518872 GRIK4Q16099 956 aa33.76■■■□□ 2.99
SYNPO-203ENST00000518872 MAFAQ8NHW3 353 aaPredicted RBP33.76■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms