RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 KLF18A0A0U1RQI7 1052 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 FAM155AB1AL88 458 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-205ENST00000514271 PTPRAP18433 802 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 OSBPP22059 807 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 PMS1P54277 932 aaKnown RBP8.22□□□□□ -1.09
CLIP1-205ENST00000514271 ACTN3Q08043 901 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-205ENST00000514271 GRIK3Q13003 919 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 PPFIA1Q13136 1202 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 PPP2R5BQ15173 497 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 NCAPH2Q6IBW4 605 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 MAMSTRQ6ZN01 415 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 TAX1BP1Q86VP1 789 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 CNGA4Q8IV77 575 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 GMCL1P1Q8NEA9 526 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 NCOA7Q8NI08 942 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 LACRTQ9GZZ8 138 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 CSRNP2Q9H175 543 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 ZNF236Q9UL36 1845 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 LGALS16A8MUM7 142 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 GCLCP48506 637 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-205ENST00000514271 SMTNP53814 917 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 NAP1L1P55209 391 aaKnown RBP8.22□□□□□ -1.09
CLIP1-205ENST00000514271 PRMT2P55345 433 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 CEBPZQ03701 1054 aaKnown RBP8.22□□□□□ -1.09
CLIP1-205ENST00000514271 XRCC4Q13426 336 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 LBX2Q6XYB7 198 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 IQCA1Q86XH1 822 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 DGKHQ86XP1 1220 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 SDR42E1Q8WUS8 393 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 TSPAN18Q96SJ8 248 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 CCDC134Q9H6E4 229 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 EBF2Q9HAK2 575 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 FAM184BQ9ULE4 1060 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 AFG3L2Q9Y4W6 797 aa8.22□□□□□ -1.09
CLIP1-205ENST00000514271 CCDC196A0A1B0GTZ2 297 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 WDR46O15213 610 aaKnown RBP8.21□□□□□ -1.09
CLIP1-205ENST00000514271 HOXA7P31268 230 aaPredicted RBP8.21□□□□□ -1.09
CLIP1-205ENST00000514271 CCDC181Q5TID7 509 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 MB21D1Q8N884 522 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 OXER1Q8TDS5 423 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 BAP1Q92560 729 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 BEGAINQ9BUH8 593 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 KBTBD4Q9NVX7 518 aa8.21□□□□□ -1.09
CLIP1-205ENST00000514271 SYNRGQ9UMZ2 1314 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 CTAGE9A4FU28 777 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 SLC35G1Q2M3R5 365 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 RILPL1Q5EBL4 403 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 CHST3Q7LGC8 479 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 GRAMD1CQ8IYS0 662 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 ATL2Q8NHH9 583 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 HDAC7Q8WUI4 952 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 DCAF4Q8WV16 495 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 OPTNQ96CV9 577 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 RRP36Q96EU6 259 aaKnown RBP8.21□□□□□ -1.1
CLIP1-205ENST00000514271 PARK7Q99497 189 aaKnown RBP8.21□□□□□ -1.1
CLIP1-205ENST00000514271 CXorf56Q9H5V9 222 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 HAUS4Q9H6D7 363 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF408Q9H9D4 720 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.21□□□□□ -1.1
CLIP1-205ENST00000514271 TSKSQ9UJT2 592 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 SNX12Q9UMY4 172 aa8.21□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA6L4A6NEF3 574 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L10C9JJH3 530 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CREB3O43889 395 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CACNB3P54284 484 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GPS2Q13227 327 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 MAP9Q49MG5 647 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CMPK2Q5EBM0 449 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 SPDYCQ5MJ68 293 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 KANK3Q6NY19 840 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CYP26C1Q6V0L0 522 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 RALYLQ86SE5 291 aaKnown RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 SPATS2Q86XZ4 545 aaKnown RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 MORC4Q8TE76 937 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CTAGE1Q96RT6 745 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 SLC12A4Q9UP95 1085 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 AGTPBP1Q9UPW5 1226 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 TMX2Q9Y320 296 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 FAM169AQ9Y6X4 670 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CNTNAP5Q8WYK1 1306 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA6CA6NDK9 693 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA6BA6NDN3 693 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 RHOBTB3O94955 611 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 TTLL1O95922 423 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA6DP0CG33 693 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CALM1P0DP23 149 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CALM2P0DP24 149 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CALM3P0DP25 149 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 RASA1P20936 1047 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 SMARCA1P28370 1054 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 MARCKSP29966 332 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 HSPA9P38646 679 aaKnown RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 LMAN1P49257 510 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GUCY1B3Q02153 619 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 STK38Q15208 465 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 UAP1Q16222 522 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ECM1Q16610 540 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ALS2CLQ60I27 953 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF280DQ6N043 979 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 FAM160B2Q86V87 743 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms