RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CYP2C18P33260 490 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 EXOSC10Q01780 885 aaKnown RBP9.22□□□□□ -0.93
SCN1A-207ENST00000507401 ARHGAP1Q07960 439 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 KRT32Q14532 448 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 PGM5Q15124 567 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 DGKDQ16760 1214 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 LY6KQ17RY6 165 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 NBPF20Q3BBV1 942 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 TMEM240Q5SV17 173 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 XRRA1Q6P2D8 792 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 NFXL1Q6ZNB6 911 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 Q7L0L9 218 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 DHX32Q7L7V1 743 aaKnown RBP9.22□□□□□ -0.93
SCN1A-207ENST00000507401 SESTD1Q86VW0 696 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 ZSCAN30Q86W11 494 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 TEX2Q8IWB9 1127 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 FANCBQ8NB91 859 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 AFG1LQ8WV93 481 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 COPS5Q92905 334 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 RNPC3Q96LT9 517 aaKnown RBP9.22□□□□□ -0.93
SCN1A-207ENST00000507401 NEK1Q96PY6 1258 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 PPP1R9BQ96SB3 815 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.22□□□□□ -0.93
SCN1A-207ENST00000507401 NOC4LQ9BVI4 516 aaKnown RBP9.22□□□□□ -0.93
SCN1A-207ENST00000507401 SEMA6BQ9H3T3 888 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 IL23AQ9NPF7 189 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 SLC12A7Q9Y666 1083 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 MRVI1Q9Y6F6 885 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 SCN10AQ9Y5Y9 1956 aa9.22□□□□□ -0.93
SCN1A-207ENST00000507401 GOLGA6L22H0YM25 854 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 DYNC1I1O14576 645 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 FGBP02675 491 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 PFKMP08237 780 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 MMP3P08254 477 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 HMGB1P09429 215 aaKnown RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 MYCLP12524 364 aaPredicted RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 CCND2P30279 289 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 HOXA13P31271 388 aaPredicted RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 ICAM3P32942 547 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 RFC2P35250 354 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 GGCXP38435 758 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 ZNF697Q5TEC3 545 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 MYSM1Q5VVJ2 828 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 SYNE3Q6ZMZ3 975 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 ZNF365Q70YC5 407 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 DHX37Q8IY37 1157 aaKnown RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 SRBD1Q8N5C6 995 aaKnown RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 PPTC7Q8NI37 304 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 HERVK_113Q902F9 699 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 KCNB2Q92953 911 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 PPP1R12CQ9BZL4 782 aa9.21□□□□□ -0.94
SCN1A-207ENST00000507401 MTIF3Q9H2K0 278 aaKnown RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 SEC63Q9UGP8 760 aaKnown RBP9.21□□□□□ -0.94
SCN1A-207ENST00000507401 SPATA31C2B4DYI2 1134 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 MEIS2O14770 477 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 EPB41L2O43491 1005 aaKnown RBP9.2□□□□□ -0.94
SCN1A-207ENST00000507401 HOXD8P13378 290 aaPredicted RBP9.2□□□□□ -0.94
SCN1A-207ENST00000507401 GNPTABQ3T906 1256 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 FAM47CQ5HY64 1035 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 CELF3Q5SZQ8 465 aaKnown RBP9.2□□□□□ -0.94
SCN1A-207ENST00000507401 FCHSD1Q86WN1 690 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 RETREG2Q8NC44 543 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 KAT2BQ92831 832 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 CUL5Q93034 780 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 MYL10Q9BUA6 226 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 KATNAL1Q9BW62 490 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 TRMT13Q9NUP7 481 aaKnown RBP9.2□□□□□ -0.94
SCN1A-207ENST00000507401 RBM28Q9NW13 759 aaKnown RBP9.2□□□□□ -0.94
SCN1A-207ENST00000507401 SLC27A5Q9Y2P5 690 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 FRMPD4Q14CM0 1322 aa9.2□□□□□ -0.94
SCN1A-207ENST00000507401 MYH7BA7E2Y1 1941 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 HAS3O00219 553 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 PARNO95453 639 aaKnown RBP9.19□□□□□ -0.94
SCN1A-207ENST00000507401 IQCF3P0C7M6 154 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 ACRP10323 421 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 MSNP26038 577 aaKnown RBP9.19□□□□□ -0.94
SCN1A-207ENST00000507401 RCAN1P53805 252 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 CCL23P55773 120 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 MRPS9P82933 396 aaKnown RBP9.19□□□□□ -0.94
SCN1A-207ENST00000507401 SP2Q02086 613 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 BFSP2Q13515 415 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 COL9A3Q14050 684 aaPredicted RBP9.19□□□□□ -0.94
SCN1A-207ENST00000507401 NEDD9Q14511 834 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 PCNX4Q63HM2 1172 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 TMTC3Q6ZXV5 915 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 FBXL16Q8N461 479 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 SMARCC2Q8TAQ2 1214 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 SNX21Q969T3 373 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 GUCD1Q96NT3 240 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 INPP4AQ96PE3 977 aaPredicted RBP9.19□□□□□ -0.94
SCN1A-207ENST00000507401 SENP7Q9BQF6 1050 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 REPIN1Q9BWE0 567 aaKnown RBP9.19□□□□□ -0.94
SCN1A-207ENST00000507401 WNT8AQ9H1J5 351 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 PSTPIP2Q9H939 334 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 UMODL1Q5DID0 1318 aa9.19□□□□□ -0.94
SCN1A-207ENST00000507401 MAFGO15525 162 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 ZBTB43O43298 467 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 FIBPO43427 364 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 ZNF500O60304 480 aaPredicted RBP9.18□□□□□ -0.94
SCN1A-207ENST00000507401 KIF20AO95235 890 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms