RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 RBAK-RBAKDNI3L0D1 243 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FAM26FQ5R3K3 315 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ANKRD13CQ8N6S4 541 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 RIN2Q8WYP3 895 aaPredicted RBP17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 HINFPQ9BQA5 517 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FEZ2Q9UHY8 353 aaPredicted RBP17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SERPINB13Q9UIV8 391 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 HYOU1Q9Y4L1 999 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PCDHAC2Q9Y5I4 1007 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ADAMTSL1Q8N6G6 1762 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 E9PMD0 336 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ZBTB5O15062 677 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NCK2O43639 380 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SLC1A4P43007 532 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TLR10Q9BXR5 811 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TANGO6Q9C0B7 1094 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SMARCAL1Q9NZC9 954 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 EHD2Q9NZN4 543 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PCDHA12Q9UN75 941 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SHTN1A0MZ66 631 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TRAF5O00463 557 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TCP1P17987 556 aaKnown RBP17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 GGCXP38435 758 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MRPL12P52815 198 aaKnown RBP17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KLHDC7AQ5VTJ3 777 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CACNA2D4Q7Z3S7 1137 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 DHX37Q8IY37 1157 aaKnown RBP17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ALS2CR12Q96Q35 445 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PSTPIP2Q9H939 334 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NLRC4Q9NPP4 1024 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CEP72Q9P209 647 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SWAP70Q9UH65 585 aa17.75■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MYO3BQ8WXR4 1341 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SLURP2P0DP57 97 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 GCFC2P16383 781 aaKnown RBP17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CXCR5P32302 372 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SCNN1DP51172 638 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 LEKR1Q6ZMV7 388 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KCTD1Q719H9 257 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TBC1D7Q9P0N9 293 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FAM184BQ9ULE4 1060 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SBF1O95248 1867 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NPHP3-ACAD11A0A0J9YXS1 232 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MARSP56192 900 aaKnown RBP17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CCDC40Q4G0X9 1142 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FAM83BQ5T0W9 1011 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FOXR1Q6PIV2 292 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TRIM59Q8IWR1 403 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SYN2Q92777 582 aaPredicted RBP17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CEP63Q96MT8 703 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 UIMC1Q96RL1 719 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PSMB7Q99436 277 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PSMD1Q99460 953 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP40Q9NVE5 1235 aa17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CWC15Q9P013 229 aaKnown RBP17.74■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 PLA2G4BP0C869 781 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MRPS25P82663 173 aaKnown RBP17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 APBA1Q02410 837 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 GPATCH4Q5T3I0 446 aaKnown RBP17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 LRRC31Q6UY01 552 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KIAA0825Q8IV33 1275 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 RNF10Q8N5U6 811 aaKnown RBP17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 AFAP1L1Q8TED9 768 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 RUBCNQ92622 972 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NT5C3AQ9H0P0 336 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KCTD10Q9H3F6 313 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 LCMT1Q9UIC8 334 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KIAA1024Q9UPX6 916 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SUGT1Q9Y2Z0 365 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KDM3AQ9Y4C1 1321 aa17.73■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 BUB1O43683 1085 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SERPING1P05155 500 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SSBP05455 408 aaKnown RBP eCLIP17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 HAUS3Q68CZ6 603 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 NELFCDQ8IXH7 590 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ZC3H3Q8IXZ2 948 aaKnown RBP17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SCFD1Q8WVM8 642 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CRACR2AQ9BSW2 395 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 LSM14BQ9BX40 385 aaKnown RBP17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 COA1Q9GZY4 146 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 KCNMB3Q9NPA1 279 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SCAF8Q9UPN6 1271 aaKnown RBP17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 POTEB3A0JP26 581 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 POTECB2RU33 542 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L15C9J2P7 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L13C9JLJ4 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L11C9JVI0 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L18D6R9N7 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L22D6RA61 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L17D6RBQ6 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L19D6RCP7 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L20D6RJB6 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 MARCH6O60337 910 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CYP11B2P19099 503 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SLC7A5Q01650 507 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L24Q0WX57 530 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SFMBT2Q5VUG0 894 aa17.72■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CCDC70Q6NSX1 233 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms