RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 CD320Q9NPF0 282 aa6.34□□□□□ -1.39
HMGXB4-208ENST00000498325 DBNLQ9UJU6 430 aaKnown RBP6.34□□□□□ -1.39
HMGXB4-208ENST00000498325 STXBP5LQ9Y2K9 1186 aa6.34□□□□□ -1.39
HMGXB4-208ENST00000498325 AK9Q5TCS8 1911 aa6.34□□□□□ -1.39
HMGXB4-208ENST00000498325 UQCRFS1P1P0C7P4 283 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 GDNFP39905 211 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 ATP2B3Q16720 1220 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 ATG14Q6ZNE5 492 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 RASAL3Q86YV0 1011 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 ANKRD18AQ8IVF6 992 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 LPIN2Q92539 896 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 HAUS7Q99871 368 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 FSD1Q9BTV5 496 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 ANO2Q9NQ90 1003 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 MTMR7Q9Y216 660 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 JAG2Q9Y219 1238 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 LAMB2P55268 1798 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 ZNF609O15014 1411 aa6.33□□□□□ -1.4
HMGXB4-208ENST00000498325 ABCC12Q96J65 1359 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 RAD50Q92878 1312 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 CENPFP49454 3210 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 TMEM238LA0A1B0GVL6 79 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 TCAF2A6NFQ2 919 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 ADM5C9JUS6 153 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 SGSM2O43147 1006 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 FKTNO75072 461 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 SLC5A1P13866 664 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 GMPSP49915 693 aaPredicted RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 ANAPC15P60006 121 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 ERVK-24P63145 666 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 ST5P78524 1137 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 PUM3Q15397 648 aaKnown RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 ZC3H12AQ5D1E8 599 aaKnown RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 CWC27Q6UX04 472 aaKnown RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 DDX46Q7L014 1031 aaKnown RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 HSCBQ8IWL3 235 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 DEFB123Q8N688 67 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 C2orf69Q8N8R5 385 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 CNBD1Q8NA66 436 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 ZNF512BQ96KM6 892 aaPredicted RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 PSMD1Q99460 953 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 DNAJC2Q99543 621 aaKnown RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 DCP1AQ9NPI6 582 aaPredicted RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 C19orf73Q9NVV2 129 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 PAG1Q9NWQ8 432 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 TRIM17Q9Y577 477 aa6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 DDX60Q8IY21 1712 aaKnown RBP6.32□□□□□ -1.4
HMGXB4-208ENST00000498325 RFX7Q2KHR2 1363 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 WTIPA6NIX2 430 aaPredicted RBP6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 ABL1P00519 1130 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 MED14OSP0DP75 135 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 NPR1P16066 1061 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 HOXA5P20719 270 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 FGFR2P21802 821 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 RPS8P62241 208 aaKnown RBP6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 PPP2R3AQ06190 1150 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 UBE4AQ14139 1066 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 RABEP1Q15276 862 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 TTF1Q15361 905 aaPredicted RBP6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 ZSCAN25Q6NSZ9 544 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 OTOP1Q7RTM1 612 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 VGLL2Q8N8G2 317 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 KBTBD3Q8NAB2 608 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 SNX21Q969T3 373 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 ARMC5Q96C12 935 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 FAM122AQ96E09 287 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 ANKRD2Q9GZV1 360 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 EPB41L4BQ9H329 900 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 KCNK12Q9HB15 430 aa6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 RBBP6Q7Z6E9 1792 aaKnown RBP6.31□□□□□ -1.4
HMGXB4-208ENST00000498325 SPEF2Q9C093 1822 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 KLRG2A4D1S0 409 aaPredicted RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 GOLIM4O00461 696 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 NUAK1O60285 661 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 CPNE3O75131 537 aaKnown RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 GADD45BO75293 160 aaPredicted RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 ZFYP08048 801 aaPredicted RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 KCNJ4P48050 445 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 CAP1Q01518 475 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 CHRNDQ07001 517 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 CXCL9Q07325 125 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 NMIQ13287 307 aaPredicted RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 MCMDC2Q4G0Z9 681 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 PDZD3Q86UT5 571 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 RPGRQ92834 1020 aaKnown RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 RBM17Q96I25 401 aaKnown RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 FOXQ1Q9C009 403 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.3□□□□□ -1.41e-6■■■■□ 21.2
HMGXB4-208ENST00000498325 HELLSQ9NRZ9 838 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 TMEM39AQ9NV64 488 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 GNL3LQ9NVN8 582 aaKnown RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 MTMR10Q9NXD2 777 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 SMG5Q9UPR3 1016 aaKnown RBP6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 PTPN22Q9Y2R2 807 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 RIC1Q4ADV7 1423 aa6.3□□□□□ -1.4
HMGXB4-208ENST00000498325 RNF113AO15541 343 aaKnown RBP6.29□□□□□ -1.4
HMGXB4-208ENST00000498325 TAF5LO75529 589 aa6.29□□□□□ -1.4
HMGXB4-208ENST00000498325 ZKSCAN1P17029 563 aaPredicted RBP6.29□□□□□ -1.4
HMGXB4-208ENST00000498325 ADORA1P30542 326 aa6.29□□□□□ -1.4
HMGXB4-208ENST00000498325 HSPA4P34932 840 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms