RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 NOVA2Q9UNW9 492 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 COL4A3BPQ9Y5P4 624 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 KIAA1551Q9HCM1 1747 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 COL5A2P05997 1499 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 F8VZ95 297 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 F8W031 263 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 SNAP23O00161 211 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 KCNK3O14649 394 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 SART1O43290 800 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 PPFIA2O75334 1257 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 GBP2P32456 591 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 IGHMBP2P38935 993 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 MAGOHP61326 146 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 FKBP3Q00688 224 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 SEPT2Q15019 361 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ZCWPW2Q504Y3 356 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 CROCCP2Q86T23 111 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 LRRC57Q8N9N7 239 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 OR2W6PQ8NHA6 318 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 CCDC26Q8TAB7 109 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 UBLCP1Q8WVY7 318 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 TBC1D5Q92609 795 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 MAGOHBQ96A72 148 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ZNF317Q96PQ6 595 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 LZTS2Q9BRK4 669 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 TXLNGYQ9BZA5 131 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ZMYND12Q9H0C1 365 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 BZW2Q9Y6E2 419 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 LAMB2P55268 1798 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 SLIT2O94813 1529 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 A0A087X0T9 212 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 MYMKA6NI61 221 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 NMT2O60551 498 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 NUDT17P0C025 328 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 FAM228BP0C875 321 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 ALADP13716 330 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 DYNLL1P63167 89 aaKnown RBP10.59□□□□□ -0.71
SYNE1-230ENST00000495090 NONOQ15233 471 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE1-230ENST00000495090 PPP2R5EQ16537 467 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 C11orf91Q3C1V1 193 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 CCDC152Q4G0S7 254 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 TOM1L2Q6ZVM7 507 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 PIGWQ7Z7B1 504 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 CABLES1Q8TDN4 633 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 PGM2Q96G03 612 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 MOV10L1Q9BXT6 1211 aaKnown RBP10.59□□□□□ -0.71
SYNE1-230ENST00000495090 NEUROG2Q9H2A3 272 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 BLOC1S4Q9NUP1 217 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 TTC7AQ9ULT0 858 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-230ENST00000495090 SCN7AQ01118 1682 aa10.59□□□□□ -0.71
SYNE1-230ENST00000495090 A0A0A6YYK5 440 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 TSPY2A6NKD2 308 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 SSBP05455 408 aaKnown RBP eCLIP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 CYP19A1P11511 503 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 FXR2P51116 673 aaKnown RBP eCLIP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 KLHL30Q0D2K2 578 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 GRB10Q13322 594 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 ZNF268Q14587 947 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 E2F5Q15329 346 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 ASIC2Q16515 512 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 KRT71Q3SY84 523 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 SLFN11Q7Z7L1 901 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 NEK8Q86SG6 692 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 PROSER2Q86WR7 435 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 CCDC63Q8NA47 563 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 LMBR1Q8WVP7 490 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 LARP4BQ92615 738 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 LSM14BQ9BX40 385 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 CRNKL1Q9BZJ0 848 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 TANGO6Q9C0B7 1094 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 DCP1AQ9NPI6 582 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 NLRC4Q9NPP4 1024 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 SUCLA2Q9P2R7 463 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 ABCF2Q9UG63 623 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 MAD2L2Q9UI95 211 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 PACSIN2Q9UNF0 486 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 NOC2LQ9Y3T9 749 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 KIF13BQ9NQT8 1826 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 PHF20L1A8MW92 1017 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 OPLAHO14841 1288 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 CEP104O60308 925 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 BUB1BO60566 1050 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 NEBLO76041 1014 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 PAX7P23759 505 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 IL6STP40189 918 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 NPEPPSP55786 919 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 POLR2FP61218 127 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 ICA1Q05084 483 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 CHRNDQ07001 517 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 GRIK3Q13003 919 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 FAM47AQ5JRC9 791 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 HIBCHQ6NVY1 386 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 DZIP3Q86Y13 1208 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 TRIM59Q8IWR1 403 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 ZC3H3Q8IXZ2 948 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 MYOCDQ8IZQ8 938 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 SYCE1Q8N0S2 351 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 PNMA1Q8ND90 353 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 HPS3Q969F9 1004 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms