RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TSKSQ9UJT2 592 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 KIAA1024Q9UPX6 916 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 DNM3Q9UQ16 869 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 FRMPD4Q14CM0 1322 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 SOWAHDA6NJG2 315 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 MEIS1O00470 390 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 CTNND1O60716 968 aaKnown RBP11.92□□□□□ -0.5
USP4-214ENST00000491791 EYA4O95677 639 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 ICAM1P05362 532 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 ERVK-24P63145 666 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 TUBB4BP68371 445 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 FKBP3Q00688 224 aaKnown RBP11.92□□□□□ -0.5
USP4-214ENST00000491791 NFIL3Q16649 462 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 VWA3BQ502W6 1294 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 PRR16Q569H4 304 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 ARSHQ5FYA8 562 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 WDR59Q6PJI9 974 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 EPM2AIP1Q7L775 607 aaPredicted RBP11.92□□□□□ -0.5
USP4-214ENST00000491791 OTOP1Q7RTM1 612 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 KRT26Q7Z3Y9 468 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 CCDC170Q8IYT3 715 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 KCND2Q9NZV8 630 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 ZNF215Q9UL58 517 aaPredicted RBP11.92□□□□□ -0.5
USP4-214ENST00000491791 SIK3Q9Y2K2 1263 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 EPN1Q9Y6I3 576 aaPredicted RBP11.92□□□□□ -0.5
USP4-214ENST00000491791 ATAD5Q96QE3 1844 aa11.92□□□□□ -0.5
USP4-214ENST00000491791 ZNF536O15090 1300 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 POTEB3A0JP26 581 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 E9PMD0 336 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 SETQ01105 290 aaPredicted RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 IKQ13123 557 aaPredicted RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 GIT2Q14161 759 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 HSP90AA2PQ14568 343 aaPredicted RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 NBPF9Q3BBW0 867 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 TBC1D10BQ4KMP7 808 aaPredicted RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 FKBP15Q5T1M5 1219 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 POTEBQ6S5H4 581 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 DYMQ7RTS9 669 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 SAMD7Q7Z3H4 446 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 PDCL2Q8N4E4 241 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 PRPF38AQ8NAV1 312 aaKnown RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 ZNF592Q92610 1267 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 CCDC102AQ96A19 550 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 HOOK2Q96ED9 719 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 RIT2Q99578 217 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 WDR18Q9BV38 432 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 NOC4LQ9BVI4 516 aaKnown RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 WDR11Q9BZH6 1224 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 KCTD10Q9H3F6 313 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 NDST4Q9H3R1 872 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 MRPL44Q9H9J2 332 aaKnown RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 GBA2Q9HCG7 927 aaPredicted RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 CGNQ9P2M7 1197 aaKnown RBP11.91□□□□□ -0.5
USP4-214ENST00000491791 ZNF112Q9UJU3 913 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 TRAF3IP3Q9Y228 551 aa11.91□□□□□ -0.5
USP4-214ENST00000491791 B4DLN1 442 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 COBLO75128 1261 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 NDUFA10O95299 355 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 GAP43P17677 238 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 ARHGAP25P42331 645 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 MTIF2P46199 727 aaKnown RBP11.9□□□□□ -0.5
USP4-214ENST00000491791 PPP2R3AQ06190 1150 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 RASA3Q14644 834 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 MTF1Q14872 753 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 TSR1Q2NL82 804 aaKnown RBP11.9□□□□□ -0.5
USP4-214ENST00000491791 USH1GQ495M9 461 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 CEP55Q53EZ4 464 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 RGMBQ6NW40 437 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 GPBP1Q86WP2 473 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 MCF2L2Q86YR7 1114 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 SULF1Q8IWU6 871 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 CDAN1Q8IWY9 1227 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 NEK9Q8TD19 979 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 TMEM174Q8WUU8 243 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 CPLX3Q8WVH0 158 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 SCFD1Q8WVM8 642 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 SYN2Q92777 582 aaPredicted RBP11.9□□□□□ -0.5
USP4-214ENST00000491791 HPS3Q969F9 1004 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 MCOLN1Q9GZU1 580 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 VEZTQ9HBM0 779 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 OLFML3Q9NRN5 406 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 EMILIN3Q9NT22 766 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 FAM184BQ9ULE4 1060 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 PLAGL2Q9UPG8 496 aa11.9□□□□□ -0.5
USP4-214ENST00000491791 RBBP6Q7Z6E9 1792 aaKnown RBP11.9□□□□□ -0.51
USP4-214ENST00000491791 SHTN1A0MZ66 631 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 EFCAB8A8MWE9 144 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 EIF3CLB5ME19 914 aaKnown RBP11.89□□□□□ -0.51
USP4-214ENST00000491791 PDXKO00764 312 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 RAD21O60216 631 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 KIF5CO60282 957 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 LCA5LO95447 670 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 IDEP14735 1019 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 CASQ1P31415 396 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 RGS19P49795 217 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 USP14P54578 494 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 SNAP25P60880 206 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 GNG11P61952 73 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 KRT83P78385 493 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 DGKZQ13574 1117 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms