RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SH3GLB2Q9NR46 395 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 SETD4Q9NVD3 440 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 COL6A3P12111 3177 aa20.66■□□□□ 0.9
COL9A3-214ENST00000490398 M0R2N6 131 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 DDX39AO00148 427 aaKnown RBP20.65■□□□□ 0.9
COL9A3-214ENST00000490398 PITPNM1O00562 1244 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 DHX15O43143 795 aaKnown RBP20.65■□□□□ 0.9
COL9A3-214ENST00000490398 TREHO43280 583 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 CCNE2O96020 404 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 FGBP02675 491 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 MARK3P27448 753 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 ANKRD1Q15327 319 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 TCTN1Q2MV58 587 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 PSRC1Q6PGN9 363 aaPredicted RBP20.65■□□□□ 0.9
COL9A3-214ENST00000490398 CPLX2Q6PUV4 134 aaKnown RBP20.65■□□□□ 0.9
COL9A3-214ENST00000490398 GTF3C6Q969F1 213 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 LENG9Q96B70 501 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 SLC9A2Q9UBY0 812 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 PCDHA4Q9UN74 947 aa20.65■□□□□ 0.9
COL9A3-214ENST00000490398 CHD9Q3L8U1 2897 aa20.64■□□□□ 0.9
COL9A3-214ENST00000490398 NFASCO94856 1347 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 C17orf102A2RUQ5 167 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 JAK2O60674 1132 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 CKBP12277 381 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 ACTR2P61160 394 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 PTK7Q13308 1070 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 BFSP2Q13515 415 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 NIPA1Q7RTP0 329 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 DEFB123Q8N688 67 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 RETREG2Q8NC44 543 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 BICD2Q8TD16 824 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 HERVK_113Q902F9 699 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 SCN5AQ14524 2016 aa20.64■□□□□ 0.89
COL9A3-214ENST00000490398 STK36Q9NRP7 1315 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 ADAM17P78536 824 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 RBL2Q08999 1139 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 MBTPS1Q14703 1052 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 PRR16Q569H4 304 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 GPR153Q6NV75 609 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 SERINC5Q86VE9 423 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 BLIDQ8IZY5 108 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 CAGE1Q8TC20 777 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 OXER1Q8TDS5 423 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 ZBTB10Q96DT7 871 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 FAM161BQ96MY7 647 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 OSBPL7Q9BZF2 842 aa20.63■□□□□ 0.89
COL9A3-214ENST00000490398 EIF5BO60841 1220 aaKnown RBP20.62■□□□□ 0.89
COL9A3-214ENST00000490398 LGR5O75473 907 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 SELPP16109 830 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 CIITAP33076 1130 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 PBX2P40425 430 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 SMAD3P84022 425 aaKnown RBP20.62■□□□□ 0.89
COL9A3-214ENST00000490398 ZNF618Q5T7W0 954 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 MCTP2Q6DN12 878 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 LRRC8DQ7L1W4 858 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 DAGLBQ8NCG7 672 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 NSUN7Q8NE18 718 aaKnown RBP20.62■□□□□ 0.89
COL9A3-214ENST00000490398 TBCKQ8TEA7 893 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 AFAP1L1Q8TED9 768 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 LMBR1Q8WVP7 490 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 ATP6V0A1Q93050 837 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 GJA10Q969M2 543 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 SDF4Q9BRK5 362 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 PHF20Q9BVI0 1012 aa20.62■□□□□ 0.89
COL9A3-214ENST00000490398 ORC3Q9UBD5 711 aaPredicted RBP20.62■□□□□ 0.89
COL9A3-214ENST00000490398 ZNF215Q9UL58 517 aaPredicted RBP20.62■□□□□ 0.89
COL9A3-214ENST00000490398 NBNO60934 754 aa20.61■□□□□ 0.89
COL9A3-214ENST00000490398 CDKL5O76039 1030 aa20.61■□□□□ 0.89
COL9A3-214ENST00000490398 RPUSD2Q8IZ73 545 aaKnown RBP20.61■□□□□ 0.89
COL9A3-214ENST00000490398 GLG1Q92896 1179 aa20.61■□□□□ 0.89
COL9A3-214ENST00000490398 C22orf23Q9BZE7 217 aa20.61■□□□□ 0.89
COL9A3-214ENST00000490398 TTYH1Q9H313 450 aaPredicted RBP20.61■□□□□ 0.89
COL9A3-214ENST00000490398 EYSQ5T1H1 3165 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 TRIP12Q14669 1992 aaPredicted RBP20.6■□□□□ 0.89
COL9A3-214ENST00000490398 IPO5O00410 1097 aaKnown RBP20.6■□□□□ 0.89
COL9A3-214ENST00000490398 ATG7O95352 703 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 TDP2O95551 362 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 ABHD15Q6UXT9 468 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 RUFY4Q6ZNE9 571 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 CCDC155Q8N6L0 562 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 ZNF577Q9BSK1 485 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 MTMR10Q9NXD2 777 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 TANC1Q9C0D5 1861 aa20.6■□□□□ 0.89
COL9A3-214ENST00000490398 EMSYQ7Z589 1322 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-214ENST00000490398 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-214ENST00000490398 MSH4O15457 936 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 RFC2P35250 354 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 THPOP40225 353 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 FOSBP53539 338 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 PPFIA1Q13136 1202 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 PLCB4Q15147 1175 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 EARS2Q5JPH6 523 aaKnown RBP20.59■□□□□ 0.89
COL9A3-214ENST00000490398 MARCH8Q5T0T0 291 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 CCDC60Q8IWA6 550 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-214ENST00000490398 GUCD1Q96NT3 240 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 FTOQ9C0B1 505 aaKnown RBP eCLIP20.59■□□□□ 0.89
COL9A3-214ENST00000490398 SMARCAD1Q9H4L7 1026 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 ERAP1Q9NZ08 941 aa20.59■□□□□ 0.89
COL9A3-214ENST00000490398 TET1Q8NFU7 2136 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms