RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 NELFBQ8WX92 580 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 BBXQ8WY36 941 aaPredicted RBP13.55□□□□□ -0.24
HDAC6-230ENST00000488543 SPATC1LQ9H0A9 340 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 EHMT1Q9H9B1 1298 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 ST7Q9NRC1 585 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 PASKQ96RG2 1323 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 POTEB3A0JP26 581 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 FANCGO15287 622 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 SERPINC1P01008 464 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 CETPP11597 493 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 GSDMDP57764 484 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 PAK1Q13153 545 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 POTEBQ6S5H4 581 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 NCAPG2Q86XI2 1143 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 RMDN3Q96TC7 470 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 MOV10L1Q9BXT6 1211 aaKnown RBP13.55□□□□□ -0.24
HDAC6-230ENST00000488543 CYP39A1Q9NYL5 469 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 MAPK8IP1Q9UQF2 711 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 CBFA2T2O43439 604 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 OSBPP22059 807 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 NCAPH2Q6IBW4 605 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 KIF18AQ8NI77 898 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 SLC5A5Q92911 643 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 NT5C3AQ9H0P0 336 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 ACAD9Q9H845 621 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 FRMPD4Q14CM0 1322 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 SPATA31C1P0DKV0 1188 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 ARP10275 920 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 MYCLP12524 364 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-230ENST00000488543 ITGB5P18084 799 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 ERCC3P19447 782 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 MRPS9P82933 396 aaKnown RBP13.54□□□□□ -0.24
HDAC6-230ENST00000488543 CNTN2Q02246 1040 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 PDE4DQ08499 809 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 ERCC6LQ2NKX8 1250 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 UNC13DQ70J99 1090 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 EXOC1Q9NV70 894 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 IMPACTQ9P2X3 320 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 KIAA1024Q9UPX6 916 aa13.54□□□□□ -0.24
HDAC6-230ENST00000488543 E9PMD0 336 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 EML1O00423 815 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 MEIS1O00470 390 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PSMD10O75832 226 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 FCER1AP12319 257 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PMS1P54277 932 aaKnown RBP13.53□□□□□ -0.24
HDAC6-230ENST00000488543 EHHADHQ08426 723 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 FSTL1Q12841 308 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 STK4Q13043 487 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 CEP55Q53EZ4 464 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 CATSPER3Q86XQ3 398 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 RIOX2Q8IUF8 465 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 MB21D1Q8N884 522 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 HPS3Q969F9 1004 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 DNAJC19Q96DA6 116 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 WDR11Q9BZH6 1224 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 A0A0G2JMZ2 1700 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PVALEFA0A1B0GWK0 134 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 POTEFA5A3E0 1075 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 ZBTB48P10074 688 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PABPC4Q13310 644 aaKnown RBP eCLIP13.53□□□□□ -0.242e-6■■■■□ 25.6
HDAC6-230ENST00000488543 PGM5Q15124 567 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 COBLL1Q53SF7 1204 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 POTEGQ6S5H5 508 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 DYMQ7RTS9 669 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 VSTM4Q8IW00 320 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 ANKRD35Q8N283 1001 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 SAMD3Q8N6K7 520 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 ANKRD13CQ8N6S4 541 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 KIAA0895Q8NCT3 520 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 SMCR8Q8TEV9 937 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PXMP2Q9NR77 195 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PKD2L1Q9P0L9 805 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 CGNQ9P2M7 1197 aaKnown RBP13.53□□□□□ -0.24
HDAC6-230ENST00000488543 PNMA2Q9UL42 364 aa13.53□□□□□ -0.24
HDAC6-230ENST00000488543 TRIM49BA6NDI0 452 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 ECM2O94769 699 aaPredicted RBP13.52□□□□□ -0.24
HDAC6-230ENST00000488543 RPA1P27694 616 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 GRM1Q13255 1194 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 WDR78Q5VTH9 848 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 ARHGEF16Q5VV41 709 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 HAUS3Q68CZ6 603 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 RASAL3Q86YV0 1011 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 CCDC150Q8NCX0 1101 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 DDX12PQ92771 950 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 CCDC47Q96A33 483 aaKnown RBP13.52□□□□□ -0.24
HDAC6-230ENST00000488543 MXRA8Q9BRK3 442 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 PDCD2LQ9BRP1 358 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 PORCNQ9H237 461 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 MAP3K20Q9NYL2 800 aaKnown RBP13.52□□□□□ -0.24
HDAC6-230ENST00000488543 DNAI1Q9UI46 699 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 LCTP09848 1927 aa13.52□□□□□ -0.24
HDAC6-230ENST00000488543 ASTN1O14525 1302 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 A0A1B0GTH6 734 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 SLU7O95391 586 aaKnown RBP13.52□□□□□ -0.25
HDAC6-230ENST00000488543 PLA2G4BP0C869 781 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 RGMBQ6NW40 437 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 TTI2Q6NXR4 508 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 OTOP1Q7RTM1 612 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 ERMNQ8TAM6 284 aa13.52□□□□□ -0.25
HDAC6-230ENST00000488543 DHTKD1Q96HY7 919 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms