RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 AENQ8WTP8 325 aaKnown RBP19.79■□□□□ 0.76
VIM-206ENST00000487938 TBC1D5Q92609 795 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 TEKT1Q969V4 418 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 CEP63Q96MT8 703 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 P2RX7Q99572 595 aaKnown RBP19.79■□□□□ 0.76
VIM-206ENST00000487938 TRIM34Q9BYJ4 488 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 KCNMB3Q9NPA1 279 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 MYH4Q9Y623 1939 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 TRIM37O94972 964 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 RAPGEF1Q13905 1077 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 CDC37Q16543 378 aaPredicted RBP19.79■□□□□ 0.76
VIM-206ENST00000487938 AFAP1L1Q8TED9 768 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 POLD4Q9HCU8 107 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 FAM184BQ9ULE4 1060 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 HOXA7P31268 230 aaPredicted RBP19.78■□□□□ 0.76
VIM-206ENST00000487938 PAFAH1B1P43034 410 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 CASP5P51878 434 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 PRR16Q569H4 304 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 SLFN13Q68D06 897 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 FAM133AQ8N9E0 248 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 ADAMTSL1Q8N6G6 1762 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 ARFGEF1Q9Y6D6 1849 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 TULP2O00295 520 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 GNA14O95837 355 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 TAL1P17542 331 aaPredicted RBP19.78■□□□□ 0.76
VIM-206ENST00000487938 USP11P51784 963 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 SLC12A3P55017 1021 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 CATSPER3Q86XQ3 398 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 PLEKHA4Q9H4M7 779 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 RBM12Q9NTZ6 932 aaKnown RBP19.78■□□□□ 0.76
VIM-206ENST00000487938 CWC15Q9P013 229 aaKnown RBP19.78■□□□□ 0.76
VIM-206ENST00000487938 LCMT1Q9UIC8 334 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 MYO3BQ8WXR4 1341 aa19.78■□□□□ 0.76
VIM-206ENST00000487938 DDTLA6NHG4 134 aaPredicted RBP19.77■□□□□ 0.76
VIM-206ENST00000487938 RBAK-RBAKDNI3L0D1 243 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 MEIS2O14770 477 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 PALMO75781 387 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 EPS15P42566 896 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 KCNH2Q12809 1159 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 HHIPL2Q6UWX4 724 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 NUCKS1Q9H1E3 243 aaKnown RBP19.77■□□□□ 0.76
VIM-206ENST00000487938 ADAMTS1Q9UHI8 967 aa19.77■□□□□ 0.76
VIM-206ENST00000487938 A0A087X0T9 212 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 FTCDO95954 541 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 FAM228BP0C875 321 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 ACTN1P12814 892 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 KLRC1P26715 233 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 CRKP46108 304 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 ITIH3Q06033 890 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 PABPC4Q13310 644 aaKnown RBP eCLIP19.77■□□□□ 0.751e-7■■■□□ 16.8
VIM-206ENST00000487938 CERKLQ49MI3 558 aaPredicted RBP19.77■□□□□ 0.75
VIM-206ENST00000487938 HAUS3Q68CZ6 603 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 LRRC31Q6UY01 552 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 KRT27Q7Z3Y8 459 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 RNF10Q8N5U6 811 aaKnown RBP19.77■□□□□ 0.75
VIM-206ENST00000487938 SYN2Q92777 582 aaPredicted RBP19.77■□□□□ 0.75
VIM-206ENST00000487938 NAP1L4Q99733 375 aaKnown RBP19.77■□□□□ 0.75
VIM-206ENST00000487938 PACSIN1Q9BY11 444 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 DHX36Q9H2U1 1008 aaKnown RBP19.77■□□□□ 0.75
VIM-206ENST00000487938 DBNDD1Q9H9R9 158 aa19.77■□□□□ 0.75
VIM-206ENST00000487938 PACSIN2Q9UNF0 486 aaPredicted RBP19.77■□□□□ 0.75
VIM-206ENST00000487938 GOLGA6BA6NDN3 693 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 ARHGAP4P98171 946 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 USH1GQ495M9 461 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 KIAA0825Q8IV33 1275 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 CCDC17Q96LX7 622 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 CYP3A7-CYP3A51PA0A087WV96 503 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 CYP3A7P24462 503 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 NR2F2P24468 414 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 RBM5P52756 815 aaKnown RBP eCLIP19.76■□□□□ 0.75
VIM-206ENST00000487938 MARSP56192 900 aaKnown RBP19.76■□□□□ 0.75
VIM-206ENST00000487938 RNASE9P60153 205 aaKnown RBP19.76■□□□□ 0.75
VIM-206ENST00000487938 KLHL30Q0D2K2 578 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 SIAH1Q8IUQ4 282 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 LTBP1Q14766 1721 aa19.76■□□□□ 0.75
VIM-206ENST00000487938 CETN3O15182 167 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 GIT2Q14161 759 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 NAB2Q15742 525 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 KIAA0753Q2KHM9 967 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 SLFN12Q8IYM2 578 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 BCAS3Q9H6U6 928 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 STIM2Q9P246 746 aa19.75■□□□□ 0.75
VIM-206ENST00000487938 SLC9A1P19634 815 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 SPIRE1Q08AE8 756 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 SLC18A3Q16572 532 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 SKIDA1Q1XH10 827 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 DNAAF5Q86Y56 855 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 GLT8D2Q9H1C3 349 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 GANQ9H2C0 597 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 HDAC9Q9UKV0 1011 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 SPATA31C1P0DKV0 1188 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 IKQ13123 557 aaPredicted RBP19.74■□□□□ 0.75
VIM-206ENST00000487938 ASIC2Q16515 512 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 CFAP221Q4G0U5 840 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 C8orf74Q6P047 294 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 ARHGAP27Q6ZUM4 889 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 SFR1Q86XK3 245 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 ETNPPLQ8TBG4 499 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 MKL1Q969V6 931 aa19.74■□□□□ 0.75
VIM-206ENST00000487938 EHD4Q9H223 541 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms