RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 LARP6Q9BRS8 491 aaKnown RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 SLC28A3Q9HAS3 691 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 NCOA5Q9HCD5 579 aaKnown RBP18.94■□□□□ 0.62
TRIM54-203ENST00000485306 JADE2Q9NQC1 790 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 TANC1Q9C0D5 1861 aa18.94■□□□□ 0.62
TRIM54-203ENST00000485306 SMIM10L2AP0DMW4 78 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 SMIM10L2BP0DMW5 78 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 FOSL2P15408 326 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 IFNAR1P17181 557 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 ZNF200P98182 395 aaPredicted RBP18.93■□□□□ 0.62
TRIM54-203ENST00000485306 AP3B2Q13367 1082 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 PKN1Q16512 942 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 MCTP2Q6DN12 878 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 PHOSPHO2Q8TCD6 241 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 MYLIPQ8WY64 445 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 SEPT1Q8WYJ6 367 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 DHX38Q92620 1227 aaKnown RBP18.93■□□□□ 0.62
TRIM54-203ENST00000485306 ATP6V0A1Q93050 837 aa18.93■□□□□ 0.62
TRIM54-203ENST00000485306 RNF26Q9BY78 433 aaPredicted RBP18.93■□□□□ 0.62
TRIM54-203ENST00000485306 RBM19Q9Y4C8 960 aaKnown RBP18.93■□□□□ 0.62
TRIM54-203ENST00000485306 ATP9AO75110 1047 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 BAIAP3O94812 1187 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 KCNA2P16389 499 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 TCF7P36402 384 aaPredicted RBP18.92■□□□□ 0.62
TRIM54-203ENST00000485306 GRIN2CQ14957 1233 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 SERINC5Q86VE9 423 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 GTF3C6Q969F1 213 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 SLC9A7Q96T83 725 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 MXRA8Q9BRK3 442 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 SLC26A6Q9BXS9 759 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 RNPEPQ9H4A4 650 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 C6orf50Q9HD87 102 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 PCDHA11Q9Y5I1 949 aa18.92■□□□□ 0.62
TRIM54-203ENST00000485306 KAT6AQ92794 2004 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 CPLX1O14810 134 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 PPFIA3O75145 1194 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 CDKL5O76039 1030 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 GNA11P29992 359 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 ZNF76P36508 570 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 KCNJ6P48051 423 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 ZNF618Q5T7W0 954 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 ANO3Q9BYT9 981 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 PKD2L1Q9P0L9 805 aa18.91■□□□□ 0.62
TRIM54-203ENST00000485306 ESYT2A0FGR8 921 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 KIF28PB7ZC32 967 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 THPOP40225 353 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 CLK2P49760 499 aaKnown RBP18.9■□□□□ 0.62
TRIM54-203ENST00000485306 RABGGTBP53611 331 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 SCRN1Q12765 414 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 STK3Q13188 491 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 TRIM71Q2Q1W2 868 aaKnown RBP18.9■□□□□ 0.62
TRIM54-203ENST00000485306 CEP55Q53EZ4 464 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 CNKSR3Q6P9H4 555 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 MAFAQ8NHW3 353 aaPredicted RBP18.9■□□□□ 0.62
TRIM54-203ENST00000485306 PGBD1Q96JS3 809 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 GAS2L1Q99501 681 aaPredicted RBP18.9■□□□□ 0.62
TRIM54-203ENST00000485306 SDF4Q9BRK5 362 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 LLPHQ9BRT6 129 aaKnown RBP18.9■□□□□ 0.62
TRIM54-203ENST00000485306 NKX2-4Q9H2Z4 354 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 KCNH7Q9NS40 1196 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 SETD4Q9NVD3 440 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 TMEM260Q9NX78 707 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 EMSYQ7Z589 1322 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 COL6A3P12111 3177 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 GBF1Q92538 1859 aa18.9■□□□□ 0.62
TRIM54-203ENST00000485306 RSPH10B2B2RC85 870 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 TREHO43280 583 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 EFCAB14O75071 495 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 LARGE1O95461 756 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 CXCL10P02778 98 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 RSPH10BP0C881 870 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 HOXC8P31273 242 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 SREBF1P36956 1147 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 CUL4AQ13619 759 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 HIC1Q14526 733 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 TRIM50Q86XT4 487 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 TRIM22Q8IYM9 498 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 BICD2Q8TD16 824 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 GLG1Q92896 1179 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 TNPO1Q92973 898 aaKnown RBP18.89■□□□□ 0.61
TRIM54-203ENST00000485306 ZMYND12Q9H0C1 365 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 SMARCAD1Q9H4L7 1026 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 JPH1Q9HDC5 661 aaPredicted RBP18.89■□□□□ 0.61
TRIM54-203ENST00000485306 ERAP1Q9NZ08 941 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 SLC9A2Q9UBY0 812 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 NRCAMQ92823 1304 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 TET1Q8NFU7 2136 aa18.89■□□□□ 0.61
TRIM54-203ENST00000485306 ABHD14A-ACY1A0A1B0GW23 586 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 GSTTP1A0A1W2PQM5 241 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 NBNO60934 754 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 CAND2O75155 1236 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 ARHGAP4P98171 946 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 SSRP1Q08945 709 aaKnown RBP18.88■□□□□ 0.61
TRIM54-203ENST00000485306 IKBKEQ14164 716 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 JAKMIP3Q5VZ66 844 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 REXO1Q8N1G1 1221 aaKnown RBP18.88■□□□□ 0.61
TRIM54-203ENST00000485306 CCDC148Q8NFR7 591 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 CYP2W1Q8TAV3 490 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 WNT8BQ93098 351 aa18.88■□□□□ 0.61
TRIM54-203ENST00000485306 INTS4Q96HW7 963 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms