RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 GGPS1O95749 300 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 METAP2P50579 478 aaKnown RBP eCLIP11.48□□□□□ -0.57
CPSF4-213ENST00000484112 COL9A3Q14050 684 aaPredicted RBP11.48□□□□□ -0.57
CPSF4-213ENST00000484112 ANKRD1Q15327 319 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 PTPROQ16827 1216 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 CSPP1Q1MSJ5 1256 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 SLC35G1Q2M3R5 365 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 HSDL1Q3SXM5 330 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 CELF3Q5SZQ8 465 aaKnown RBP11.48□□□□□ -0.57
CPSF4-213ENST00000484112 MYSM1Q5VVJ2 828 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 HOMER1Q86YM7 354 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 SRBD1Q8N5C6 995 aaKnown RBP11.48□□□□□ -0.57
CPSF4-213ENST00000484112 ZNF274Q96GC6 653 aaPredicted RBP11.48□□□□□ -0.57
CPSF4-213ENST00000484112 YME1L1Q96TA2 773 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 MLXIPQ9HAP2 919 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 BRPF3Q9ULD4 1205 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 EMSYQ7Z589 1322 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 MYH6P13533 1939 aa11.48□□□□□ -0.57
CPSF4-213ENST00000484112 GRXCR2A6NFK2 248 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 PRR33A8MZF0 331 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 PIK3CDO00329 1044 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 PPP1R11O60927 126 aaPredicted RBP11.47□□□□□ -0.57
CPSF4-213ENST00000484112 RGS20O76081 388 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 PLEKHA8P1O95397 391 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 CTSHP09668 335 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 ALADP13716 330 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 HOXA13P31271 388 aaPredicted RBP11.47□□□□□ -0.57
CPSF4-213ENST00000484112 GPM6BQ13491 265 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 C8orf34Q49A92 452 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 EPC2Q52LR7 807 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 PPP1R18Q6NYC8 613 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 BANK1Q8NDB2 785 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 ATP6V0A1Q93050 837 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 MRPL38Q96DV4 380 aaKnown RBP11.47□□□□□ -0.57
CPSF4-213ENST00000484112 TCEANC2Q96MN5 208 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 PDCD2LQ9BRP1 358 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 GLT8D2Q9H1C3 349 aa11.47□□□□□ -0.57
CPSF4-213ENST00000484112 GCOM1H8Y6P7 765 aaPredicted RBP11.46□□□□□ -0.57
CPSF4-213ENST00000484112 TREHO43280 583 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 POLR2MP0CAP2 368 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 CPA1P15085 419 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 HTRA4P83105 476 aaPredicted RBP11.46□□□□□ -0.57
CPSF4-213ENST00000484112 SP2Q02086 613 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 APOBRQ0VD83 1088 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 PGM5Q15124 567 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 PUS10Q3MIT2 529 aaKnown RBP11.46□□□□□ -0.57
CPSF4-213ENST00000484112 TIGD5Q53EQ6 642 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 PLEKHG4Q58EX7 1191 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 TCEAL5Q5H9L2 206 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 KCNV1Q6PIU1 500 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 SERINC5Q86VE9 423 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 FCHSD1Q86WN1 690 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 FAM177A1Q8N128 213 aaPredicted RBP11.46□□□□□ -0.57
CPSF4-213ENST00000484112 SEPT8Q92599 483 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 GPKOWQ92917 476 aaPredicted RBP eCLIP11.46□□□□□ -0.57
CPSF4-213ENST00000484112 CUL5Q93034 780 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 C16orf70Q9BSU1 422 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 PDRG1Q9NUG6 133 aa11.46□□□□□ -0.57
CPSF4-213ENST00000484112 CNTNAP5Q8WYK1 1306 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 XIRP2A4UGR9 3374 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 H3BNC9 293 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 H3BRB1 525 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 NOP56O00567 594 aaKnown RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 OPLAHO14841 1288 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 STAM2O75886 525 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 SMIM10L2AP0DMW4 78 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 SMIM10L2BP0DMW5 78 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 HOXD8P13378 290 aaPredicted RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 RXRAP19793 462 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 UBA1P22314 1058 aaKnown RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 PDIA3P30101 505 aaKnown RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 CCND2P30279 289 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 FUT2Q10981 343 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 TOB2Q14106 344 aaPredicted RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 CPLX2Q6PUV4 134 aaKnown RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 VSIG10LQ86VR7 867 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 TMEM192Q8IY95 271 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 IL31RAQ8NI17 732 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 NEK9Q8TD19 979 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 SP7Q8TDD2 431 aaPredicted RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 CCDC12Q8WUD4 166 aaPredicted RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 TOP1MTQ969P6 601 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 SAMD11Q96NU1 681 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 RNF26Q9BY78 433 aaPredicted RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 OSBPL7Q9BZF2 842 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 RNPEPQ9H4A4 650 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 TUT1Q9H6E5 874 aaKnown RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 BCAS3Q9H6U6 928 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 UPF2Q9HAU5 1272 aaKnown RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 FAM217BQ9NTX9 383 aaPredicted RBP11.45□□□□□ -0.58
CPSF4-213ENST00000484112 CLDND1Q9NY35 253 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 KIAA1217Q5T5P2 1943 aa11.45□□□□□ -0.58
CPSF4-213ENST00000484112 SIP14410 1827 aa11.44□□□□□ -0.58
CPSF4-213ENST00000484112 FRMPD4Q14CM0 1322 aa11.44□□□□□ -0.58
CPSF4-213ENST00000484112 PRPF3O43395 683 aaKnown RBP11.44□□□□□ -0.58
CPSF4-213ENST00000484112 CSPG5O95196 566 aa11.44□□□□□ -0.58
CPSF4-213ENST00000484112 LGALS2P05162 132 aa11.44□□□□□ -0.58
CPSF4-213ENST00000484112 IFNAR1P17181 557 aa11.44□□□□□ -0.58
CPSF4-213ENST00000484112 CDC27P30260 824 aa11.44□□□□□ -0.58
CPSF4-213ENST00000484112 MKRN4PQ13434 485 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms