RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 PITPNM1O00562 1244 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 ATG7O95352 703 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 CYP2C9P11712 490 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 SP4Q02446 784 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 RBL2Q08999 1139 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 NONOQ15233 471 aaKnown RBP eCLIP20.45■□□□□ 0.86
HDAC6-225ENST00000483506 PTGISQ16647 500 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 TRIM50Q86XT4 487 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 TMEM199Q8N511 208 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 WNT8AQ9H1J5 351 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 UMODL1Q5DID0 1318 aa20.45■□□□□ 0.86
HDAC6-225ENST00000483506 CYP2C18P33260 490 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 EPHB4P54760 987 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 CHMP4BP1P59074 171 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 ACTR2P61160 394 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 PPIGQ13427 754 aaKnown RBP eCLIP20.44■□□□□ 0.867e-8■■■□□ 17
HDAC6-225ENST00000483506 LRIT3Q3SXY7 679 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 Q4G0T1 1027 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 PRR16Q569H4 304 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 CAGE1Q8TC20 777 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 TNFRSF25Q93038 417 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 PCYT2Q99447 389 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 ZNF577Q9BSK1 485 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 TBC1D22BQ9NU19 505 aa20.44■□□□□ 0.86
HDAC6-225ENST00000483506 TRIP12Q14669 1992 aaPredicted RBP20.44■□□□□ 0.86
HDAC6-225ENST00000483506 IGKV6D-21A0A0A0MT36 114 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 CCNE2O96020 404 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 MMP1P03956 469 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 SMIM10L2AP0DMW4 78 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 SMIM10L2BP0DMW5 78 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 FXR1P51114 621 aaKnown RBP eCLIP20.43■□□□□ 0.86
HDAC6-225ENST00000483506 HMGN5P82970 282 aaKnown RBP20.43■□□□□ 0.86
HDAC6-225ENST00000483506 HIC1Q14526 733 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 UTP14CQ5TAP6 766 aaKnown RBP20.43■□□□□ 0.86
HDAC6-225ENST00000483506 OXER1Q8TDS5 423 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 SMARCAD1Q9H4L7 1026 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 ERAP1Q9NZ08 941 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 NOD1Q9Y239 953 aa20.43■□□□□ 0.86
HDAC6-225ENST00000483506 CCDC194A0A1B0GVG4 234 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 MSH4O15457 936 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 CSF2RAP15509 400 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 KRT2P35908 639 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 MCM2P49736 904 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 PTK7Q13308 1070 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 BFSP2Q13515 415 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 DHX38Q92620 1227 aaKnown RBP20.42■□□□□ 0.86
HDAC6-225ENST00000483506 BRMS1Q9HCU9 246 aa20.42■□□□□ 0.86
HDAC6-225ENST00000483506 C17orf102A2RUQ5 167 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 CD2BP2O95400 341 aaKnown RBP20.41■□□□□ 0.86
HDAC6-225ENST00000483506 TDP2O95551 362 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 ADAM17P78536 824 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 SHHQ15465 462 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 INF2Q27J81 1249 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 TRIM71Q2Q1W2 868 aaKnown RBP20.41■□□□□ 0.86
HDAC6-225ENST00000483506 C9orf50Q5SZB4 431 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 KRT40Q6A162 431 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 ZNF746Q6NUN9 644 aaPredicted RBP20.41■□□□□ 0.86
HDAC6-225ENST00000483506 ABHD15Q6UXT9 468 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 C16orf59Q7L2K0 433 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 PLPPR4Q7Z2D5 763 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 NEK8Q86SG6 692 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 SERINC5Q86VE9 423 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 CCDC155Q8N6L0 562 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 AFAP1L1Q8TED9 768 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 SLC5A5Q92911 643 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 RIT2Q99578 217 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 RNPEPQ9H4A4 650 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 IL23AQ9NPF7 189 aa20.41■□□□□ 0.86
HDAC6-225ENST00000483506 LAMA2P24043 3122 aaKnown RBP20.4■□□□□ 0.86
HDAC6-225ENST00000483506 RFC2P35250 354 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 ZNF200P98182 395 aaPredicted RBP20.4■□□□□ 0.86
HDAC6-225ENST00000483506 KRT76Q01546 638 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 TRIM29Q14134 588 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 PPP4R3AQ6IN85 833 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 PIK3AP1Q6ZUJ8 805 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 SMAP1Q8IYB5 467 aaPredicted RBP20.4■□□□□ 0.86
HDAC6-225ENST00000483506 NRCAMQ92823 1304 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 GLG1Q92896 1179 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 VWCEQ96DN2 955 aa20.4■□□□□ 0.86
HDAC6-225ENST00000483506 KAT6AQ92794 2004 aa20.39■□□□□ 0.86
HDAC6-225ENST00000483506 IQCF3P0C7M6 154 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 GNAT1P11488 350 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 GCFC2P16383 781 aaKnown RBP20.39■□□□□ 0.85
HDAC6-225ENST00000483506 SLC26A2P50443 739 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 CCL23P55773 120 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 NR5A1Q13285 461 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 EARS2Q5JPH6 523 aaKnown RBP20.39■□□□□ 0.85
HDAC6-225ENST00000483506 PSRC1Q6PGN9 363 aaPredicted RBP20.39■□□□□ 0.85
HDAC6-225ENST00000483506 DIS3L2Q8IYB7 885 aaKnown RBP20.39■□□□□ 0.85
HDAC6-225ENST00000483506 ETNPPLQ8TBG4 499 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 LMBR1Q8WVP7 490 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 TMX3Q96JJ7 454 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 NAP1L4Q99733 375 aaKnown RBP20.39■□□□□ 0.85
HDAC6-225ENST00000483506 AZI2Q9H6S1 392 aa20.39■□□□□ 0.85
HDAC6-225ENST00000483506 SZT2Q5T011 3432 aa20.38■□□□□ 0.85
HDAC6-225ENST00000483506 SCN5AQ14524 2016 aa20.38■□□□□ 0.85
HDAC6-225ENST00000483506 WDR81Q562E7 1941 aa20.38■□□□□ 0.85
HDAC6-225ENST00000483506 BTBD18B2RXH4 712 aa20.38■□□□□ 0.85
HDAC6-225ENST00000483506 DDX39AO00148 427 aaKnown RBP20.38■□□□□ 0.85
HDAC6-225ENST00000483506 PFKMP08237 780 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms