RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PRR16Q569H4 304 aa17.72■□□□□ 0.43
HMGA1-206ENST00000478214 C16orf59Q7L2K0 433 aa17.72■□□□□ 0.43
HMGA1-206ENST00000478214 LENG9Q96B70 501 aa17.72■□□□□ 0.43
HMGA1-206ENST00000478214 SCLYQ96I15 445 aa17.72■□□□□ 0.43
HMGA1-206ENST00000478214 ZNF215Q9UL58 517 aaPredicted RBP17.72■□□□□ 0.43
HMGA1-206ENST00000478214 DDX39AO00148 427 aaKnown RBP17.71■□□□□ 0.43
HMGA1-206ENST00000478214 IPO5O00410 1097 aaKnown RBP17.71■□□□□ 0.43
HMGA1-206ENST00000478214 DHX15O43143 795 aaKnown RBP17.71■□□□□ 0.43
HMGA1-206ENST00000478214 SMIM10L2AP0DMW4 78 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 SMIM10L2BP0DMW5 78 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 ACRP10323 421 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 USP11P51784 963 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 FOSBP53539 338 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 ACTR2P61160 394 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 SETQ01105 290 aaPredicted RBP17.71■□□□□ 0.43
HMGA1-206ENST00000478214 LRIT3Q3SXY7 679 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 OXER1Q8TDS5 423 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 DHX38Q92620 1227 aaKnown RBP17.71■□□□□ 0.43
HMGA1-206ENST00000478214 ZSCAN31Q96LW9 406 aaPredicted RBP17.71■□□□□ 0.43
HMGA1-206ENST00000478214 TBC1D32Q96NH3 1257 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 PCYT2Q99447 389 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 ZNF577Q9BSK1 485 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 RNPEPQ9H4A4 650 aa17.71■□□□□ 0.43
HMGA1-206ENST00000478214 C17orf102A2RUQ5 167 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 CCNE2O96020 404 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 MARK3P27448 753 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 NONOQ15233 471 aaKnown RBP eCLIP17.7■□□□□ 0.426e-7■□□□□ 10
HMGA1-206ENST00000478214 KRT25Q7Z3Z0 450 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 GLG1Q92896 1179 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 LRCH3Q96II8 777 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.7■□□□□ 0.422e-14■■■■□ 22.2
HMGA1-206ENST00000478214 SH2B1Q9NRF2 756 aaPredicted RBP17.7■□□□□ 0.42
HMGA1-206ENST00000478214 SETD4Q9NVD3 440 aa17.7■□□□□ 0.42
HMGA1-206ENST00000478214 PITPNM1O00562 1244 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 LGR5O75473 907 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 TDP2O95551 362 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 HOXC8P31273 242 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 BFSP2Q13515 415 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 INF2Q27J81 1249 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 TMEM240Q5SV17 173 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 RETREG2Q8NC44 543 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 WNT8BQ93098 351 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 RNPC3Q96LT9 517 aaKnown RBP17.69■□□□□ 0.42
HMGA1-206ENST00000478214 SMARCAD1Q9H4L7 1026 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 IL23AQ9NPF7 189 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 SZT2Q5T011 3432 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 EMSYQ7Z589 1322 aa17.69■□□□□ 0.42
HMGA1-206ENST00000478214 CCDC194A0A1B0GVG4 234 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 MSH4O15457 936 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 ST18O60284 1047 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 ATG7O95352 703 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 IQCF3P0C7M6 154 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 NR5A1Q13285 461 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 PTK7Q13308 1070 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 ZNF365Q70YC5 407 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 CAGE1Q8TC20 777 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 ATP6V0A1Q93050 837 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 VWCEQ96DN2 955 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 LLPHQ9BRT6 129 aaKnown RBP17.68■□□□□ 0.42
HMGA1-206ENST00000478214 BACH2Q9BYV9 841 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 TBC1D22BQ9NU19 505 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 ERAP1Q9NZ08 941 aa17.68■□□□□ 0.42
HMGA1-206ENST00000478214 LAMA2P24043 3122 aaKnown RBP17.67■□□□□ 0.42
HMGA1-206ENST00000478214 CYP3A7-CYP3A51PA0A087WV96 503 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 TREHO43280 583 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 CD2BP2O95400 341 aaKnown RBP17.67■□□□□ 0.42
HMGA1-206ENST00000478214 CYP3A7P24462 503 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 KRT2P35908 639 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 RBL2Q08999 1139 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 TRIM71Q2Q1W2 868 aaKnown RBP17.67■□□□□ 0.42
HMGA1-206ENST00000478214 Q4G0T1 1027 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 EARS2Q5JPH6 523 aaKnown RBP17.67■□□□□ 0.42
HMGA1-206ENST00000478214 KRT40Q6A162 431 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 PSRC1Q6PGN9 363 aaPredicted RBP17.67■□□□□ 0.42
HMGA1-206ENST00000478214 ABHD15Q6UXT9 468 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 PIK3AP1Q6ZUJ8 805 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 DEFB128Q7Z7B8 93 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 SERINC5Q86VE9 423 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 CCDC155Q8N6L0 562 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 AFAP1L1Q8TED9 768 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 AZI2Q9H6S1 392 aa17.67■□□□□ 0.42
HMGA1-206ENST00000478214 FAM205CA6NFA0 338 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 BACH1O14867 736 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 MMP1P03956 469 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 CKBP12277 381 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 SELPP16109 830 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 STAT5BP51692 787 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 PPFIA1Q13136 1202 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 TRIM29Q14134 588 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 LETM2Q2VYF4 491 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 MOXD1Q6UVY6 613 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 RPUSD2Q8IZ73 545 aaKnown RBP17.66■□□□□ 0.42
HMGA1-206ENST00000478214 LMBR1Q8WVP7 490 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 SLC5A5Q92911 643 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 TNFRSF25Q93038 417 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 GJA10Q969M2 543 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 MBOAT7Q96N66 472 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 BRMS1Q9HCU9 246 aa17.66■□□□□ 0.42
HMGA1-206ENST00000478214 IGKV6D-21A0A0A0MT36 114 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 BTBD18B2RXH4 712 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms