RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NETO1Q8TDF5 533 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 RSAD2Q8WXG1 361 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 CLEC4DQ8WXI8 215 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 NELL1Q92832 810 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 CDCA3Q99618 268 aaPredicted RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 FOXQ1Q9C009 403 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 ADAM7Q9H2U9 754 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 CLIP2Q9UDT6 1046 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 FBXL21Q9UKT6 434 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 CTDP1Q9Y5B0 961 aaPredicted RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 C2orf16Q68DN1 1984 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 KIAA1217Q5T5P2 1943 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 ZBED9Q6R2W3 1325 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 ZNF532Q9HCE3 1301 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 FNDC1Q4ZHG4 1894 aaPredicted RBP5.75□□□□□ -1.49
USP4-209ENST00000475873 SPTLC1O15269 473 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 EOMESO95936 686 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 TOP3BO95985 862 aaKnown RBP5.75□□□□□ -1.49
USP4-209ENST00000475873 CHRNA1P02708 482 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 CFHP08603 1231 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 GHRP10912 638 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 BMP3P12645 472 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 HOXB8P17481 243 aaPredicted RBP5.75□□□□□ -1.49
USP4-209ENST00000475873 SPINK2P20155 84 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 ATP8B2P98198 1209 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 CCDC158Q5M9N0 1113 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 PLPP4Q5VZY2 271 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 CTR9Q6PD62 1173 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 RPAP2Q8IXW5 612 aaPredicted RBP5.75□□□□□ -1.49
USP4-209ENST00000475873 CMTR2Q8IYT2 770 aaKnown RBP5.75□□□□□ -1.49
USP4-209ENST00000475873 ADAM32Q8TC27 787 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 GATA6Q92908 595 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 MKL1Q969V6 931 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 CEP95Q96GE4 821 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 EHMT1Q9H9B1 1298 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 KCNK12Q9HB15 430 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 RNF216Q9NWF9 866 aaPredicted RBP5.75□□□□□ -1.49
USP4-209ENST00000475873 CA14Q9ULX7 337 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 HCFC2Q9Y5Z7 792 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 ADAMTS20P59510 1910 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 RALGAPA1Q6GYQ0 2036 aa5.75□□□□□ -1.49
USP4-209ENST00000475873 PTPN13Q12923 2485 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 KALRNO60229 2985 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 MIA3Q5JRA6 1907 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 LOXHD1Q8IVV2 1947 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 TEP1Q99973 2627 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 LOC102724159A0A0B4J2E5 919 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 FGF18O76093 207 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 GH1P01241 217 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 CASTP20810 708 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 STAT2P52630 851 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 PDE4DQ08499 809 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 LPIN1Q14693 890 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 PWP2Q15269 919 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 LPAL2Q16609 132 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 DGKDQ16760 1214 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 ZNF528Q3MIS6 628 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 FAM26DQ5JW98 314 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 RARS2Q5T160 578 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 SLFN13Q68D06 897 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 KIAA1841Q6NSI8 718 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 STK11IPQ8N1F8 1099 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 GMCL1P1Q8NEA9 526 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 MICAL1Q8TDZ2 1067 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 APBB2Q92870 758 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 EAF2Q96CJ1 260 aaPredicted RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 NECTIN4Q96NY8 510 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 C16orf70Q9BSU1 422 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 CCDC8Q9H0W5 538 aaPredicted RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 PRKRIP1Q9H875 184 aaPredicted RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 AGO3Q9H9G7 860 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 RTN4Q9NQC3 1192 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 CYP26B1Q9NR63 512 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 WNT16Q9UBV4 365 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 ADD3Q9UEY8 706 aaKnown RBP5.74□□□□□ -1.49
USP4-209ENST00000475873 CCPG1Q9ULG6 757 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 PRR12Q9ULL5 1215 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 USTQ9Y2C2 406 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 CFAP46Q8IYW2 2715 aa5.74□□□□□ -1.49
USP4-209ENST00000475873 APC2O95996 2303 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 PTPDC1A2A3K4 754 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 STK25O00506 426 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 MBD4O95243 580 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 ICAM1P05362 532 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 SMIM10L2AP0DMW4 78 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 SMIM10L2BP0DMW5 78 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 FDX1P10109 184 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 CALML3P27482 149 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 MTHFRP42898 656 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 RPS6P62753 249 aaKnown RBP5.73□□□□□ -1.49
USP4-209ENST00000475873 ADAM17P78536 824 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 UBE3AQ05086 875 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 ITIH3Q06033 890 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 MGAT3Q09327 533 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 HSDL1Q3SXM5 330 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 SLC9C2Q5TAH2 1124 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 PHLDB3Q6NSJ2 640 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 TSSK4Q6SA08 328 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 PRR23BQ6ZRT6 265 aa5.73□□□□□ -1.49
USP4-209ENST00000475873 SEPT14Q6ZU15 432 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms