RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PGBD1Q96JS3 809 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 SENP7Q9BQF6 1050 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 USP26Q9BXU7 913 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 TRANK1O15050 2925 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 KIF28PB7ZC32 967 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 STXBP3O00186 592 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 TLL1O43897 1013 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 ATP9AO75110 1047 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 KCNA2P16389 499 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 ITGB5P18084 799 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 ADD1P35611 737 aaKnown RBP18■□□□□ 0.47
CCDC88B-205ENST00000472524 ADCY7P51828 1080 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 DEFB103AP81534 67 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 MTMR1Q13613 665 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 TRIM71Q2Q1W2 868 aaKnown RBP18■□□□□ 0.47
CCDC88B-205ENST00000472524 ZNF618Q5T7W0 954 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 GIMAP8Q8ND71 665 aaPredicted RBP18■□□□□ 0.47
CCDC88B-205ENST00000472524 ATP6V0A1Q93050 837 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 CDHR1Q96JP9 859 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 RIC8AQ9NPQ8 531 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 ZNF215Q9UL58 517 aaPredicted RBP18■□□□□ 0.47
CCDC88B-205ENST00000472524 UBIAD1Q9Y5Z9 338 aa18■□□□□ 0.47
CCDC88B-205ENST00000472524 TREHO43280 583 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 PARNO95453 639 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 COL9A1P20849 921 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 RPS6KB1P23443 525 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 KCNJ6P48051 423 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 RCAN1P53805 252 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 GRB10Q13322 594 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 RNPEPQ9H4A4 650 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 JADE2Q9NQC1 790 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 BARHL2Q9NY43 387 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 LOXHD1Q8IVV2 1947 aa17.99■□□□□ 0.47
CCDC88B-205ENST00000472524 SMCO2A6NFE2 343 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 hCG_1984214I3L0E3 225 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 LPXNO60711 386 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 CXCL10P02778 98 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 TCF7P36402 384 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 THPOP40225 353 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 CNKSR3Q6P9H4 555 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 TRAF7Q6Q0C0 670 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 SERINC5Q86VE9 423 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 ZNF713Q8N859 430 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 ANO3Q9BYT9 981 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 SETD4Q9NVD3 440 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 TMEM260Q9NX78 707 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 RAPGEFL1Q9UHV5 662 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 MYH9P35579 1960 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 SIP14410 1827 aa17.98■□□□□ 0.47
CCDC88B-205ENST00000472524 CCDC196A0A1B0GTZ2 297 aa17.97■□□□□ 0.47
CCDC88B-205ENST00000472524 PSMA5P28066 241 aa17.97■□□□□ 0.47
CCDC88B-205ENST00000472524 HOXC8P31273 242 aa17.97■□□□□ 0.47
CCDC88B-205ENST00000472524 MBTPS1Q14703 1052 aa17.97■□□□□ 0.47
CCDC88B-205ENST00000472524 AAK1Q2M2I8 961 aa17.97■□□□□ 0.47
CCDC88B-205ENST00000472524 WDR81Q562E7 1941 aa17.97■□□□□ 0.47
CCDC88B-205ENST00000472524 RSPH10B2B2RC85 870 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 FOSP01100 380 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 CTSHP09668 335 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 RSPH10BP0C881 870 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 GNAT1P11488 350 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 SCG2P13521 617 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 MARK3P27448 753 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 ARHGAP4P98171 946 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 PFKFB3Q16875 520 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 CYP2W1Q8TAV3 490 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 SEPT1Q8WYJ6 367 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 MXRA8Q9BRK3 442 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 ZBED2Q9BTP6 218 aa17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 PRRC2BQ5JSZ5 2229 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-205ENST00000472524 NID2Q14112 1375 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 ABHD14A-ACY1A0A1B0GW23 586 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 GSTTP1A0A1W2PQM5 241 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 AP3B2Q13367 1082 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 JAKMIP3Q5VZ66 844 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 GDPD5Q8WTR4 605 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 LMBR1Q8WVP7 490 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 PHKBQ93100 1093 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 GLT8D2Q9H1C3 349 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 KCNH7Q9NS40 1196 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 MTUS1Q9ULD2 1270 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 COL4A4P53420 1690 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 EMSYQ7Z589 1322 aa17.95■□□□□ 0.46
CCDC88B-205ENST00000472524 EVPLQ92817 2033 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 BDP1A6H8Y1 2624 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 MAFGO15525 162 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 PPFIA3O75145 1194 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 LGR5O75473 907 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 GJB5O95377 273 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 ZNF76P36508 570 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 CLK2P49760 499 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 AKAP17AQ02040 695 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 FAM117BQ6P1L5 589 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 TEX2Q8IWB9 1127 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 GLG1Q92896 1179 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 SDF4Q9BRK5 362 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 AGXT2Q9BYV1 514 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 JPH1Q9HDC5 661 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 SLC9A2Q9UBY0 812 aa17.94■□□□□ 0.46
CCDC88B-205ENST00000472524 ARP10275 920 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 SREBF1P36956 1147 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms