RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 MTIF3Q9H2K0 278 aaKnown RBP9.3□□□□□ -0.92
USP48-207ENST00000471752 PCDHA6Q9UN73 950 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 PCDHA8Q9Y5H6 950 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 UBIAD1Q9Y5Z9 338 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 SLC12A7Q9Y666 1083 aa9.3□□□□□ -0.92
USP48-207ENST00000471752 MYH6P13533 1939 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 PTPRSQ13332 1948 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 FIBPO43427 364 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 EDIL3O43854 480 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 GJB5O95377 273 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 PFKMP08237 780 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 ACTN1P12814 892 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 BMP1P13497 986 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 SMARCA1P28370 1054 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 APOBRQ0VD83 1088 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 ITGB3BPQ13352 177 aaPredicted RBP9.29□□□□□ -0.92
USP48-207ENST00000471752 TJAP1Q5JTD0 557 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 KCNV1Q6PIU1 500 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 APOA5Q6Q788 366 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 SAMD3Q8N6K7 520 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 PHOSPHO2Q8TCD6 241 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 LMBR1Q8WVP7 490 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 TMEM87BQ96K49 555 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 ASB2Q96Q27 587 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 SLC9A7Q96T83 725 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 SUGCTQ9HAC7 445 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 DOCK5Q9H7D0 1870 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 CNTNAP5Q8WYK1 1306 aa9.29□□□□□ -0.92
USP48-207ENST00000471752 KLF18A0A0U1RQI7 1052 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 STXBP3O00186 592 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 NOP56O00567 594 aaKnown RBP9.28□□□□□ -0.92
USP48-207ENST00000471752 UPP2O95045 317 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 KIF5BP33176 963 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 TCF7P36402 384 aaPredicted RBP9.28□□□□□ -0.92
USP48-207ENST00000471752 KCNJ6P48051 423 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 ARHGAP4P98171 946 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 NEDD9Q14511 834 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 PLEKHG4Q58EX7 1191 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 DHX32Q7L7V1 743 aaKnown RBP9.28□□□□□ -0.92
USP48-207ENST00000471752 RTN4RL1Q86UN2 441 aaPredicted RBP9.28□□□□□ -0.92
USP48-207ENST00000471752 KHSRPQ92945 711 aaKnown RBP eCLIP9.28□□□□□ -0.921e-9■□□□□ 8.7
USP48-207ENST00000471752 LZTS2Q9BRK4 669 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 ZBED2Q9BTP6 218 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 USP26Q9BXU7 913 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 SNX14Q9Y5W7 946 aa9.28□□□□□ -0.92
USP48-207ENST00000471752 ABHD14A-ACY1A0A1B0GW23 586 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 BAIAP3O94812 1187 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 CCNE2O96020 404 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 POU3F3P20264 500 aaPredicted RBP9.27□□□□□ -0.93
USP48-207ENST00000471752 IGBP1P78318 339 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 TMEM62Q0P6H9 643 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 IKBKEQ14164 716 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 PKN1Q16512 942 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 TSGA10IPQ3SY00 556 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 JAKMIP3Q5VZ66 844 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 Q6ZUG5 572 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 CENPQQ7L2Z9 268 aaPredicted RBP9.27□□□□□ -0.93
USP48-207ENST00000471752 MYOCDQ8IZQ8 938 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 TMTC2Q8N394 836 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 CCDC155Q8N6L0 562 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 RASGRP4Q8TDF6 673 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 ADAMTS19Q8TE59 1207 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 DNAJB3Q8WWF6 145 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 LINC01599Q8WXQ3 324 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 KCNB2Q92953 911 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 CUL5Q93034 780 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 RAD9AQ99638 391 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 SENP7Q9BQF6 1050 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 MTA3Q9BTC8 594 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 KATNAL1Q9BW62 490 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 AGO3Q9H9G7 860 aaKnown RBP9.27□□□□□ -0.93
USP48-207ENST00000471752 CDHR5Q9HBB8 845 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 CD320Q9NPF0 282 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 JADE2Q9NQC1 790 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 KCNH7Q9NS40 1196 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 THEGQ9P2T0 379 aa9.27□□□□□ -0.93
USP48-207ENST00000471752 SEC63Q9UGP8 760 aaKnown RBP9.27□□□□□ -0.93
USP48-207ENST00000471752 TCF20Q9UGU0 1960 aaKnown RBP9.26□□□□□ -0.93
USP48-207ENST00000471752 SMCO2A6NFE2 343 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 GOLGA8AA7E2F4 631 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 GOLGA8BA8MQT2 603 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 FAM86B1E9PN63 330 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 DDX39AO00148 427 aaKnown RBP9.26□□□□□ -0.93
USP48-207ENST00000471752 DHX15O43143 795 aaKnown RBP9.26□□□□□ -0.93
USP48-207ENST00000471752 ZBTB43O43298 467 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 CDC45O75419 566 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 FAM86B2P0C5J1 330 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 LINC00271P0C7V0 271 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 GHRP10912 638 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 INSRRP14616 1297 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 ATP4AP20648 1035 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 GNAQP50148 359 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 NAPAP54920 295 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 ERVK-21P61565 698 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 MRPS5P82675 430 aaKnown RBP9.26□□□□□ -0.93
USP48-207ENST00000471752 HTRA4P83105 476 aaPredicted RBP9.26□□□□□ -0.93
USP48-207ENST00000471752 MGAT3Q09327 533 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 LPIN1Q14693 890 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 PLCB4Q15147 1175 aa9.26□□□□□ -0.93
USP48-207ENST00000471752 SKIV2LQ15477 1246 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms