RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 NLRC5Q86WI3 1866 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 ATG2AQ2TAZ0 1938 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 KDM4AO75164 1064 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 DNAJB1P25685 340 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 NDUFV1P49821 464 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 NMIQ13287 307 aaPredicted RBP16.8■□□□□ 0.28
CXCR4-203ENST00000466288 CBX2Q14781 532 aaPredicted RBP16.8■□□□□ 0.28
CXCR4-203ENST00000466288 CCDC178Q5BJE1 867 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 SUGP1Q8IWZ8 645 aaKnown RBP16.8■□□□□ 0.28
CXCR4-203ENST00000466288 FBXL6Q8N531 539 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 ENAHQ8N8S7 591 aaPredicted RBP16.8■□□□□ 0.28
CXCR4-203ENST00000466288 SMRP1Q8NCR6 262 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 MTMR8Q96EF0 704 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 PLVAPQ9BX97 442 aa16.8■□□□□ 0.28
CXCR4-203ENST00000466288 ENPP3O14638 875 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 GHRP10912 638 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 CCND2P30279 289 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 NT5C2P49902 561 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 RRP1P56182 461 aaKnown RBP16.79■□□□□ 0.28
CXCR4-203ENST00000466288 BTG3Q14201 252 aaPredicted RBP16.79■□□□□ 0.28
CXCR4-203ENST00000466288 TICAM2Q86XR7 235 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 TRIM50Q86XT4 487 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 STAG2Q8N3U4 1231 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 SAMD3Q8N6K7 520 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 LMBR1Q8WVP7 490 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 ZSCAN10Q96SZ4 725 aaPredicted RBP16.79■□□□□ 0.28
CXCR4-203ENST00000466288 GPR20Q99678 358 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 SUPT16HQ9Y5B9 1047 aaKnown RBP16.79■□□□□ 0.28
CXCR4-203ENST00000466288 DCHS1Q96JQ0 3298 aa16.79■□□□□ 0.28
CXCR4-203ENST00000466288 MYH7BA7E2Y1 1941 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 NOP56O00567 594 aaKnown RBP16.78■□□□□ 0.28
CXCR4-203ENST00000466288 ZNF213O14771 459 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 GFRA3O60609 400 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 DGKIO75912 1065 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 MGAT3Q09327 533 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 COASYQ13057 564 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 LPIN1Q14693 890 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 METTL7BQ6UX53 244 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 ADGRD2Q7Z7M1 963 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 EFHBQ8N7U6 833 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 P2RX5Q93086 422 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 TELO2Q9Y4R8 837 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 PCDHA1Q9Y5I3 950 aa16.78■□□□□ 0.28
CXCR4-203ENST00000466288 ZFHX2Q9C0A1 2572 aaPredicted RBP16.77■□□□□ 0.28
CXCR4-203ENST00000466288 ICAM3P32942 547 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 PDE1AP54750 535 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 VCPP55072 806 aaKnown RBP16.77■□□□□ 0.28
CXCR4-203ENST00000466288 MRPS9P82933 396 aaKnown RBP16.77■□□□□ 0.28
CXCR4-203ENST00000466288 ARHGAP4P98171 946 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 SEMA3FQ13275 785 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 CYFIP1Q7L576 1253 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 SPPL3Q8TCT6 385 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 FAM86C1Q9NVL1 165 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 ZSWIM5Q9P217 1185 aa16.77■□□□□ 0.28
CXCR4-203ENST00000466288 ZDBF2Q9HCK1 2354 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 TRIM6-TRIM34B2RNG4 842 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 B4E1Z4 1266 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 ZBTB5O15062 677 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 GLP2RO95838 553 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 ITGB1P05556 798 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 NEDD9Q14511 834 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 RUFY4Q6ZNE9 571 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 FCHSD1Q86WN1 690 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 CRIPAKQ8N1N5 446 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 PPP2R3CQ969Q6 453 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 ASIC4Q96FT7 647 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 INPP4AQ96PE3 977 aaPredicted RBP16.76■□□□□ 0.27
CXCR4-203ENST00000466288 ZNF215Q9UL58 517 aaPredicted RBP16.76■□□□□ 0.27
CXCR4-203ENST00000466288 MRPL42Q9Y6G3 142 aaKnown RBP16.76■□□□□ 0.27
CXCR4-203ENST00000466288 NRCAMQ92823 1304 aa16.76■□□□□ 0.27
CXCR4-203ENST00000466288 SPATA31C2B4DYI2 1134 aa16.75■□□□□ 0.27
CXCR4-203ENST00000466288 KLRF2D3W0D1 207 aa16.75■□□□□ 0.27
CXCR4-203ENST00000466288 GCOM1H8Y6P7 765 aaPredicted RBP16.75■□□□□ 0.27
CXCR4-203ENST00000466288 POLR2MP0CAP2 368 aa16.75■□□□□ 0.27
CXCR4-203ENST00000466288 SIGLEC14Q08ET2 396 aa16.75■□□□□ 0.27
CXCR4-203ENST00000466288 NAALADL2Q58DX5 795 aa16.75■□□□□ 0.27
CXCR4-203ENST00000466288 LINC01599Q8WXQ3 324 aa16.75■□□□□ 0.27
CXCR4-203ENST00000466288 USP15Q9Y4E8 981 aaPredicted RBP16.75■□□□□ 0.27
CXCR4-203ENST00000466288 FRMPD4Q14CM0 1322 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 NRIP1P48552 1158 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 SLC35G1Q2M3R5 365 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 GNPTABQ3T906 1256 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 FBXO47Q5MNV8 452 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 UTP14CQ5TAP6 766 aaKnown RBP16.74■□□□□ 0.27
CXCR4-203ENST00000466288 ANKRD45Q5TZF3 282 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 TAF2Q6P1X5 1199 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 KLHL23Q8NBE8 558 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 POF1BQ8WVV4 589 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 PHF7Q9BWX1 381 aaPredicted RBP16.74■□□□□ 0.27
CXCR4-203ENST00000466288 MAD2L2Q9UI95 211 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 BARX2Q9UMQ3 279 aaPredicted RBP16.74■□□□□ 0.27
CXCR4-203ENST00000466288 CACNA1HO95180 2353 aa16.74■□□□□ 0.27
CXCR4-203ENST00000466288 STAM2O75886 525 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 AVPR2P30518 371 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 RBM23Q86U06 439 aaKnown RBP16.73■□□□□ 0.27
CXCR4-203ENST00000466288 RTN4RL1Q86UN2 441 aaPredicted RBP16.73■□□□□ 0.27
CXCR4-203ENST00000466288 CMTR2Q8IYT2 770 aaKnown RBP16.73■□□□□ 0.27
CXCR4-203ENST00000466288 PALM3A6NDB9 673 aaPredicted RBP16.73■□□□□ 0.27
CXCR4-203ENST00000466288 FIBPO43427 364 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 FOXK2Q01167 660 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms