RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 BDP1A6H8Y1 2624 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.54■□□□□ 0.08
CHD3-207ENST00000466233 MBLAC1A4D2B0 266 aaPredicted RBP15.54■□□□□ 0.08
CHD3-207ENST00000466233 SPDYE3A6NKU9 549 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 FOSP01100 380 aaPredicted RBP15.54■□□□□ 0.08
CHD3-207ENST00000466233 ITGB5P18084 799 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 MTMR1Q13613 665 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 PTPROQ16827 1216 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 PPP1R18Q6NYC8 613 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 SYNE3Q6ZMZ3 975 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.54■□□□□ 0.08
CHD3-207ENST00000466233 LMBR1Q8WVP7 490 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 MYL10Q9BUA6 226 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 SMARCAD1Q9H4L7 1026 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 JADE2Q9NQC1 790 aa15.54■□□□□ 0.08
CHD3-207ENST00000466233 RRN3P2A6NIE6 340 aa15.53■□□□□ 0.08
CHD3-207ENST00000466233 PLEKHA8P1O95397 391 aa15.53■□□□□ 0.08
CHD3-207ENST00000466233 TCF7P36402 384 aaPredicted RBP15.53■□□□□ 0.08
CHD3-207ENST00000466233 TFF2Q03403 129 aa15.53■□□□□ 0.08
CHD3-207ENST00000466233 MYOCDQ8IZQ8 938 aa15.53■□□□□ 0.08
CHD3-207ENST00000466233 ZFP91Q96JP5 570 aaPredicted RBP15.53■□□□□ 0.08
CHD3-207ENST00000466233 IFIH1Q9BYX4 1025 aaKnown RBP15.53■□□□□ 0.08
CHD3-207ENST00000466233 RWDD3Q9Y3V2 267 aa15.53■□□□□ 0.08
CHD3-207ENST00000466233 NFASCO94856 1347 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.52■□□□□ 0.08
CHD3-207ENST00000466233 GSTTP1A0A1W2PQM5 241 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 SORBS3O60504 671 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 ATP9AO75110 1047 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 RB1P06400 928 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 HMGB1P09429 215 aaKnown RBP15.52■□□□□ 0.08
CHD3-207ENST00000466233 SLC26A2P50443 739 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 ARHGAP4P98171 946 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 KRT32Q14532 448 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 PUS10Q3MIT2 529 aaKnown RBP15.52■□□□□ 0.08
CHD3-207ENST00000466233 TMCO2Q7Z6W1 182 aaPredicted RBP15.52■□□□□ 0.08
CHD3-207ENST00000466233 FBXO22Q8NEZ5 403 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 PIBF1Q8WXW3 757 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 MRPL38Q96DV4 380 aaKnown RBP15.52■□□□□ 0.08
CHD3-207ENST00000466233 ANO2Q9NQ90 1003 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 PCDHA6Q9UN73 950 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 ARIH1Q9Y4X5 557 aaPredicted RBP15.52■□□□□ 0.08
CHD3-207ENST00000466233 PCDHA8Q9Y5H6 950 aa15.52■□□□□ 0.08
CHD3-207ENST00000466233 PTPRSQ13332 1948 aa15.52■□□□□ 0.07
CHD3-207ENST00000466233 XIRP2A4UGR9 3374 aa15.52■□□□□ 0.07
CHD3-207ENST00000466233 C5orf67F2Z3F1 127 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 H3BNC9 293 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 NCK2O43639 380 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 KCNQ1P51787 676 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 EXOSC10Q01780 885 aaKnown RBP15.51■□□□□ 0.07
CHD3-207ENST00000466233 COL19A1Q14993 1142 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 LEXMQ3ZCV2 418 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 EPC2Q52LR7 807 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 KRT40Q6A162 431 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 MCTP2Q6DN12 878 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 APOA5Q6Q788 366 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 DHX32Q7L7V1 743 aaKnown RBP15.51■□□□□ 0.07
CHD3-207ENST00000466233 PLPPR4Q7Z2D5 763 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 GDPD5Q8WTR4 605 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 NEK1Q96PY6 1258 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 YME1L1Q96TA2 773 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 RIC8AQ9NPQ8 531 aa15.51■□□□□ 0.07
CHD3-207ENST00000466233 CHRNA1P02708 482 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 MGAT3Q09327 533 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 PPFIA1Q13136 1202 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 AP3B2Q13367 1082 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 TIGD5Q53EQ6 642 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 UTP14CQ5TAP6 766 aaKnown RBP15.5■□□□□ 0.07
CHD3-207ENST00000466233 NIPA1Q7RTP0 329 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 SPRED2Q7Z698 418 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 TRIM50Q86XT4 487 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 NME8Q8N427 588 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 GLG1Q92896 1179 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 MXRA8Q9BRK3 442 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 FTHL17Q9BXU8 183 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 JPH1Q9HDC5 661 aaPredicted RBP15.5■□□□□ 0.07
CHD3-207ENST00000466233 KCNH7Q9NS40 1196 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 TUBE1Q9UJT0 475 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 REV3LO60673 3130 aa15.5■□□□□ 0.07
CHD3-207ENST00000466233 FUT2Q10981 343 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 GRIK4Q16099 956 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 CEP55Q53EZ4 464 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 MARCH8Q5T0T0 291 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 IER5Q5VY09 327 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 CENPQQ7L2Z9 268 aaPredicted RBP15.49■□□□□ 0.07
CHD3-207ENST00000466233 TMEM192Q8IY95 271 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 FBXL16Q8N461 479 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 IL17RAQ96F46 866 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 C17orf80Q9BSJ5 609 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 LMAN2LQ9H0V9 348 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 AZI2Q9H6S1 392 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 SLC9A2Q9UBY0 812 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 MICAL3Q7RTP6 2002 aa15.49■□□□□ 0.07
CHD3-207ENST00000466233 SIP14410 1827 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 CCDC196A0A1B0GTZ2 297 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 MEIS1O00470 390 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 ZBTB43O43298 467 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 ATG7O95352 703 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 CTSHP09668 335 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 COL9A1P20849 921 aa15.48■□□□□ 0.07
CHD3-207ENST00000466233 TSHZ1Q6ZSZ6 1077 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms